HHsearch alignment for GI: 254781066 and conserved domain: PRK05431
>PRK05431 seryl-tRNA synthetase; Provisional.
Probab=97.27 E-value=0.00059 Score=42.88 Aligned_cols=122 Identities=15% Similarity=0.183 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCEECC-C-CCCCCCCCEEEECCCCCCCCCCCCCCCCHHH-----HHHHHHHH-HH
Q ss_conf 999999999999999879889847821056-8-9854454124102478867832000028589-----99989874-46
Q gi|254781066|r 23 LKRNMIQSSLREYFVENQFIEIDSMSLQYS-P-GNETHIRAFSTELIIQDHIRKPLYLQTSPEF-----SCKKLLAA-GE 94 (355)
Q Consensus 23 ~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~-~-~g~~~~~~f~t~~~~~~~~~~~~yL~~SPql-----~lK~ll~~-G~ 94 (355)
T Consensus 171 ~LerALi~f~ld~~~~~Gy~~v~~P~lv~~~~~~gtGqlPkfe~~~Y~i~--~~dl~Li~TAEvpL~~~~~~eil~~~~L 248 (422)
T PRK05431 171 RLERALIQFMLDLHTEEGYTEVIPPYLVNEESMYGTGQLPKFEEDLFKIE--DDDLYLIPTAEVPLTNLHRDEILDEEEL 248 (422)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCCCHHHHHHHC--CCCEEEECCCCCCHHHHHHCCCCCHHHC
T ss_conf 99999999999999987997996737636788744537974487754105--8871760565321233440113365439
Q ss_pred -HHHHHHHHHHCCC-CC---CCC---CCCCEEEECEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf -8899988642456-77---754---48430020001157765787775578887766641
Q gi|254781066|r 95 -EKIFCFAHAWRNG-EQ---GCL---HQPEFTMLEWYRAHESYEQLMKDCMNIIRCAAEVA 147 (355)
Q Consensus 95 -~rvyqig~~FRaE-~~---~~r---HlpEFtmLE~e~af~d~~dlm~~~E~li~~~~~~~ 147 (355)
T Consensus 249 Pik~~~~S~CFR~EAGs~GkdtrGl~RvHQF~KVE~f-~~~~pe~S~~~~e~~~~~~e~i~ 308 (422)
T PRK05431 249 PIKYTAYSPCFRSEAGSAGRDTRGLIRQHQFDKVELV-KFTKPEDSYAELEELTGNAEEIL 308 (422)
T ss_pred CHHHEEECCHHHHCCCCCCCCCCCCEEEEEECEEEEE-EECCHHHHHHHHHHHHHHHHHHH
T ss_conf 8445278836530313367556761244300003433-53586779999999999999999