HHsearch alignment for GI: 254781066 and conserved domain: PRK09350
>PRK09350 lysyl-tRNA synthetase; Provisional.
Probab=100.00 E-value=0 Score=655.93 Aligned_cols=317 Identities=33% Similarity=0.567 Sum_probs=286.2
Q ss_pred CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEECCCCCCCCCCCEEEECCCC-CCCCCCCCCCCCHHHHH
Q ss_conf 47883126154899999999999999999987988984782105689854454124102478-86783200002858999
Q gi|254781066|r 8 PWWNRDFHYRRRPFLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELIIQ-DHIRKPLYLQTSPEFSC 86 (355)
Q Consensus 8 ~~~~~~~~~r~R~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~g~~~~~~f~t~~~~~-~~~~~~~yL~~SPql~l 86 (355)
T Consensus 5 ~~w~~~a---s~~~l~~Rs~i~~~iR~ff~~~gFlEVeTP~L~~~t~~~~~~~~f~~~~~~~~~~~~~~~yL~~SPql~~ 81 (325)
T PRK09350 5 ASWQPSA---SIKNLLKRAAIIAEIRRFFADRGVLEVETPAMSQATVTDIHLVPFETRFVGPGHSQGKTLWLMTSPEYHM 81 (325)
T ss_pred CCCCCHH---HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEECCHHHHH
T ss_conf 8777714---7999999999999999999988968977984257788764676222102565545676645507919999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECEEECCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCC
Q ss_conf 98987446889998864245677754484300200011577657877755788877666418830002234332467732
Q gi|254781066|r 87 KKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRCAAEVANQKIFSFQNVNCNPFSEPE 166 (355)
Q Consensus 87 K~ll~~G~~rvyqig~~FRaE~~~~rHlpEFtmLE~e~af~d~~dlm~~~E~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (355)
T Consensus 82 k~l~~~G~~rvfqI~~~FR~E~~~~~H~pEFtmlE~~~~~~d~~d~m~~~e~ll~~~~~----------------~~~~~ 145 (325)
T PRK09350 82 KRLLAAGSGPIFQLCRSFRNEEAGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLD----------------CPPAE 145 (325)
T ss_pred HHHHHCCCCCEEEEEHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC----------------CCCCC
T ss_conf 99986678855896113228999876573778889998154899999999999999974----------------89852
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHCEECCCCCCCCCCCCCCCCHH
Q ss_conf 07888865666087653234555623279999999976887--7876534789876643003622376754432576888
Q gi|254781066|r 167 YITVAEAFARYANIDLGTTLDNPDQPDRHLLYLQAQQAGIR--VAHDDTWSDIFSRILIEKIEPNLGINCCTILDRYPAP 244 (355)
Q Consensus 167 ~i~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~ie~~l~~~~pvfi~~yP~~ 244 (355)
T Consensus 146 ~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ve~~l~~~~P~fv~d~P~~ 218 (325)
T PRK09350 146 SLSYQQAFLRYLGIDPLSA-------DKTQLREVAAKLDLSNIADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPAS 218 (325)
T ss_pred EEEHHHHHHHHHCCCCCCC-------CHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 6419999999819996548-------889999999974997566753478799999999988875076587699558433
Q ss_pred HHHHCCCCCCCCCCCCCCEEEECCEECCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH-CCCCCCCEEE
Q ss_conf 864136787783633022022367122564021069999999999999999728885301018999986-1889632453
Q gi|254781066|r 245 ESALANIYPADPRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLACL-TEMPQSSGIA 323 (355)
Q Consensus 245 ~~plak~~~~~~~va~rfdl~i~G~El~ng~~El~d~~~q~~rf~~q~~~k~~~~~e~~~~D~~fl~al-~G~PPhgG~g 323 (355)
T Consensus 219 ~~~~~~~~~~d~~~a~rfdl~~~G~El~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~~l~a~~yG~PPhgG~g 298 (325)
T PRK09350 219 QAALAQISTEDHRVAERFEVYFKGIELANGFHELTDAREQLQRFEQDNRKRAARGLPQQPIDQNLIAALKAGLPDCSGVA 298 (325)
T ss_pred CCHHHCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf 37032358789852232101048789667645668999999999999999985799800558999999667999983576
Q ss_pred CCHHHHHHHHHCCCCHHHHCCCCCCCC
Q ss_conf 159999899815597131115856487
Q gi|254781066|r 324 MGFDRLVMLVTGANNINEVIWTPFSQS 350 (355)
Q Consensus 324 lGidRLvm~l~g~~~Irdvi~FP~~r~ 350 (355)
T Consensus 299 lGlDRLvm~l~g~~~IRdvi~FP~dR~ 325 (325)
T PRK09350 299 LGVDRLIMLALGAESIAEVIAFPVDRA 325 (325)
T ss_pred EHHHHHHHHHHCCCCHHHEECCCCCCC
T ss_conf 559999999818993887107885549