HHsearch alignment for GI: 254781066 and conserved domain: TIGR02367
>TIGR02367 PylS pyrrolysyl-tRNA synthetase; InterPro: IPR012739 PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, e.g. trimethylamine methyltransferase. .
Probab=98.88 E-value=3e-10 Score=80.15 Aligned_cols=115 Identities=27% Similarity=0.346 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCEECCCCCCC-CCCCEEEECCCCC-CCCCCCCCC--CCHHHH--HHHH--HHHHHHHH
Q ss_conf 99999999999987988984782105689854-4541241024788-678320000--285899--9989--87446889
Q gi|254781066|r 26 NMIQSSLREYFVENQFIEIDSMSLQYSPGNET-HIRAFSTELIIQD-HIRKPLYLQ--TSPEFS--CKKL--LAAGEEKI 97 (355)
Q Consensus 26 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~g~~-~~~~f~t~~~~~~-~~~~~~yL~--~SPql~--lK~l--l~~G~~rv 97 (355)
T Consensus 243 Gkler~it~ffvdrGfleiksPiliP~ey~ermGi~-ndtelskqifrvdkn~ClrPmlaP~lynylrkldr~lP~Pik~ 321 (453)
T TIGR02367 243 GKLEREITKFFVDRGFLEIKSPILIPLEYVERMGID-NDTELSKQIFRVDKNLCLRPMLAPTLYNYLRKLDRILPDPIKV 321 (453)
T ss_pred HHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 467666766653124023236310105688650776-4025666666441001012100056899999987537896479
Q ss_pred HHHHHHHCCCCCCCCCCCCEEEECEEECC--CCHHHHHHHHHHHHH
Q ss_conf 99886424567775448430020001157--765787775578887
Q gi|254781066|r 98 FCFAHAWRNGEQGCLHQPEFTMLEWYRAH--ESYEQLMKDCMNIIR 141 (355)
Q Consensus 98 yqig~~FRaE~~~~rHlpEFtmLE~e~af--~d~~dlm~~~E~li~ 141 (355)
T Consensus 322 fe~GPCyrkesdGkehleeftm~nfCqmGsGCtrenle~~i~~fl~ 367 (453)
T TIGR02367 322 FEVGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLEALIKEFLD 367 (453)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 8606752435653356666665554314787326779999999887