HHsearch alignment for GI: 254781066 and conserved domain: cd00669
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=0 Score=563.40 Aligned_cols=265 Identities=27% Similarity=0.408 Sum_probs=228.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998798898478210568985445412410247886783200002858999989874468899988
Q gi|254781066|r 22 LLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELIIQDHIRKPLYLQTSPEFSCKKLLAAGEEKIFCFA 101 (355)
Q Consensus 22 l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~g~~~~~~f~t~~~~~~~~~~~~yL~~SPql~lK~ll~~G~~rvyqig 101 (355)
T Consensus 1 lr~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~-~~~~f~~~~~---~~~~~~~L~~Spel~~k~ll~~g~~~if~i~ 76 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGA-GARPFLVKYN---ALGLDYYLRISPQLFKKRLMVGGLDRVFEIN 76 (269)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEECCEEECCCCCC-CCCEEEEECC---CCCCEEEECCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 91699999999999998898998798530578987-6742573137---8994077343889999999865888679984
Q ss_pred HHHCCCCCCCCCCCCEEEECEEECCCCHHHHHHHHHHHHHHHHHHHCCC-EECCCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 6424567775448430020001157765787775578887766641883-000223433246773207888865666087
Q gi|254781066|r 102 HAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRCAAEVANQK-IFSFQNVNCNPFSEPEYITVAEAFARYANI 180 (355)
Q Consensus 102 ~~FRaE~~~~rHlpEFtmLE~e~af~d~~dlm~~~E~li~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~ 180 (355)
T Consensus 77 ~~FR~e~~~~rH~~EFtmlE~y~~~~d~~~~m~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ea~e~~--- 153 (269)
T cd00669 77 RNFRNEDLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVTYGFELEDFGLPFPRLTYREALERY--- 153 (269)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCEEEHHHHHHHH---
T ss_conf 62107898655434877578751489999999999999999999996555245355444458998785799999984---
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCEECCCCCCCCCCCCCCCCHHHHH-HCCCCCCCCCCC
Q ss_conf 6532345556232799999999768877876534789876643003622376754432576888864-136787783633
Q gi|254781066|r 181 DLGTTLDNPDQPDRHLLYLQAQQAGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDRYPAPESA-LANIYPADPRFT 259 (355)
Q Consensus 181 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ie~~l~~~~pvfi~~yP~~~~p-lak~~~~~~~va 259 (355)
T Consensus 154 ----------------------------------------------------~~p~fi~dyP~~~~~~~~~~~~~~~~~a 181 (269)
T cd00669 154 ----------------------------------------------------GQPLFLTDYPAEMHSPLASPHDVNPEIA 181 (269)
T ss_pred ----------------------------------------------------CCCEEEECCCHHCCCCCCCCCCCCCCHH
T ss_conf ----------------------------------------------------9978998985010780209079996676
Q ss_pred CCCEEEECCEECCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC-CCCCCCEEECCHHHHHHHHHCCCC
Q ss_conf 0220223671225640210699999999999999997288853010189999861-889632453159999899815597
Q gi|254781066|r 260 KRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLACLT-EMPQSSGIAMGFDRLVMLVTGANN 338 (355)
Q Consensus 260 ~rfdl~i~G~El~ng~~El~d~~~q~~rf~~q~~~k~~~~~e~~~~D~~fl~al~-G~PPhgG~glGidRLvm~l~g~~~ 338 (355)
T Consensus 182 ~rfdl~~~G~El~nG~~r~~d~~~~~~r~~~~~~~~~----~~~~~~~~yl~a~~~G~pp~~G~glG~dRL~m~~~g~~~ 257 (269)
T cd00669 182 DAFDLFINGVEVGNGSSRLHDPDIQAEVFQEQGINKE----AGMEYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTNSPT 257 (269)
T ss_pred HHCCCCCCCEEECCCCCCCCCHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCCC
T ss_conf 6502467860670325204888999999998560744----556658999999877999971663479999999808996
Q ss_pred HHHHCCCCCCC
Q ss_conf 13111585648
Q gi|254781066|r 339 INEVIWTPFSQ 349 (355)
Q Consensus 339 Irdvi~FP~~r 349 (355)
T Consensus 258 Irdv~~FPr~r 268 (269)
T cd00669 258 IREVIAFPKMR 268 (269)
T ss_pred HHHCCCCCCCC
T ss_conf 88624789988