HHsearch alignment for GI: 254781066 and conserved domain: cd00770

>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=98.14  E-value=3.3e-06  Score=56.24  Aligned_cols=122  Identities=15%  Similarity=0.202  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCCEECCC--CCCCCCCCEEEECCCCCCCCCCCCCCCCHH-----HHHHHHHHH-
Q ss_conf             999999999999999998798898478210568--985445412410247886783200002858-----999989874-
Q gi|254781066|r   21 FLLKRNMIQSSLREYFVENQFIEIDSMSLQYSP--GNETHIRAFSTELIIQDHIRKPLYLQTSPE-----FSCKKLLAA-   92 (355)
Q Consensus        21 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~--~g~~~~~~f~t~~~~~~~~~~~~yL~~SPq-----l~lK~ll~~-   92 (355)
T Consensus        51 ga~Le~AL~~f~~d~~~~~Gy~eV~tP~iv~~~~~~~sG~~~~~~e~~y~i~--~~~~~Li~tae~~l~~~~~~~~~~~~  128 (297)
T cd00770          51 GALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE--GEDLYLIATAEVPLAALHRDEILEEE  128 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCC--CHHHHHHHCCCCCEEEEEEEEECCHH
T ss_conf             9999999999999999987998998853013899854357876356521035--50555544056662234420031775


Q ss_pred             HH-HHHHHHHHHHCCC-CC---CC---CCCCCEEEECEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf             46-8899988642456-77---75---4484300200011577657877755788877666
Q gi|254781066|r   93 GE-EKIFCFAHAWRNG-EQ---GC---LHQPEFTMLEWYRAHESYEQLMKDCMNIIRCAAE  145 (355)
Q Consensus        93 G~-~rvyqig~~FRaE-~~---~~---rHlpEFtmLE~e~af~d~~dlm~~~E~li~~~~~  145 (355)
T Consensus       129 dLPlr~~~~s~cfR~Eags~G~d~~GL~RvhqF~kvE~~-~~c~pe~s~~~~e~~~~~~e~  188 (297)
T cd00770         129 ELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQF-VFTKPEESWEELEELISNAEE  188 (297)
T ss_pred             HCCCCEEECCCHHHHCCCCCCCCCCCEEEEEECCEEEEE-EECCHHHHHHHHHHHHHHHHH
T ss_conf             588650224634132037777555545788721100377-616878899999999999999