HHsearch alignment for GI: 254781066 and conserved domain: cd00770
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=98.14 E-value=3.3e-06 Score=56.24 Aligned_cols=122 Identities=15% Similarity=0.202 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCEECCC--CCCCCCCCEEEECCCCCCCCCCCCCCCCHH-----HHHHHHHHH-
Q ss_conf 999999999999999998798898478210568--985445412410247886783200002858-----999989874-
Q gi|254781066|r 21 FLLKRNMIQSSLREYFVENQFIEIDSMSLQYSP--GNETHIRAFSTELIIQDHIRKPLYLQTSPE-----FSCKKLLAA- 92 (355)
Q Consensus 21 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~--~g~~~~~~f~t~~~~~~~~~~~~yL~~SPq-----l~lK~ll~~- 92 (355)
T Consensus 51 ga~Le~AL~~f~~d~~~~~Gy~eV~tP~iv~~~~~~~sG~~~~~~e~~y~i~--~~~~~Li~tae~~l~~~~~~~~~~~~ 128 (297)
T cd00770 51 GALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE--GEDLYLIATAEVPLAALHRDEILEEE 128 (297)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCC--CHHHHHHHCCCCCEEEEEEEEECCHH
T ss_conf 9999999999999999987998998853013899854357876356521035--50555544056662234420031775
Q ss_pred HH-HHHHHHHHHHCCC-CC---CC---CCCCCEEEECEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 46-8899988642456-77---75---4484300200011577657877755788877666
Q gi|254781066|r 93 GE-EKIFCFAHAWRNG-EQ---GC---LHQPEFTMLEWYRAHESYEQLMKDCMNIIRCAAE 145 (355)
Q Consensus 93 G~-~rvyqig~~FRaE-~~---~~---rHlpEFtmLE~e~af~d~~dlm~~~E~li~~~~~ 145 (355)
T Consensus 129 dLPlr~~~~s~cfR~Eags~G~d~~GL~RvhqF~kvE~~-~~c~pe~s~~~~e~~~~~~e~ 188 (297)
T cd00770 129 ELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQF-VFTKPEESWEELEELISNAEE 188 (297)
T ss_pred HCCCCEEECCCHHHHCCCCCCCCCCCEEEEEECCEEEEE-EECCHHHHHHHHHHHHHHHHH
T ss_conf 588650224634132037777555545788721100377-616878899999999999999