HHsearch alignment for GI: 254781066 and conserved domain: cd00774

>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=98.42  E-value=5.1e-07  Score=60.99  Aligned_cols=99  Identities=28%  Similarity=0.267  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHH--HCCCEEEECCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHH----H--HHHHHHH
Q ss_conf             9999999999999999--879889847821056898544541241024788678320000285899----9--9898744
Q gi|254781066|r   22 LLKRNMIQSSLREYFV--ENQFIEIDSMSLQYSPGNETHIRAFSTELIIQDHIRKPLYLQTSPEFS----C--KKLLAAG   93 (355)
Q Consensus        22 l~~Rs~i~~~iR~ff~--~~gF~EV~TPiL~~~~~g~~~~~~f~t~~~~~~~~~~~~yL~~SPql~----l--K~ll~~G   93 (355)
T Consensus        32 ~~LK~Ni~~~W~~~fv~~~~~~~~id~~ii~p~-------LmF~T~iG~~~~~~~~~yLR--PETAQGifvnFk~~~~~~  102 (254)
T cd00774          32 VELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE-------LMFKTSIGPVESGGNLGYLR--PETAQGIFVNFKNLLEFN  102 (254)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC-------CCEECCCCCCCCCCCCEEEC--HHHHHHHHHHHHHHHHHC
T ss_conf             999999999999998743798799541003663-------22001215655898603536--345347798789999964


Q ss_pred             HHH----HHHHHHHHCCCCCCCCCC---CCEEEECEEECCCCHH
Q ss_conf             688----999886424567775448---4300200011577657
Q gi|254781066|r   94 EEK----IFCFAHAWRNGEQGCLHQ---PEFTMLEWYRAHESYE  130 (355)
Q Consensus        94 ~~r----vyqig~~FRaE~~~~rHl---pEFtmLE~e~af~d~~  130 (355)
T Consensus       103 r~kLPFGiaQIGk~FRNEIsPr~~l~R~REF~q~EiE~-F~~P~  145 (254)
T cd00774         103 RRKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEF-FVDPE  145 (254)
T ss_pred             CCCCCEEEEEEEECCCCCCCCCCCCCCHHCHHHHEEEE-EECCC
T ss_conf             88888445654202267347776754000002125788-85798