HHsearch alignment for GI: 254781066 and conserved domain: cd00774
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=98.42 E-value=5.1e-07 Score=60.99 Aligned_cols=99 Identities=28% Similarity=0.267 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHH--HCCCEEEECCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHH----H--HHHHHHH
Q ss_conf 9999999999999999--879889847821056898544541241024788678320000285899----9--9898744
Q gi|254781066|r 22 LLKRNMIQSSLREYFV--ENQFIEIDSMSLQYSPGNETHIRAFSTELIIQDHIRKPLYLQTSPEFS----C--KKLLAAG 93 (355)
Q Consensus 22 l~~Rs~i~~~iR~ff~--~~gF~EV~TPiL~~~~~g~~~~~~f~t~~~~~~~~~~~~yL~~SPql~----l--K~ll~~G 93 (355)
T Consensus 32 ~~LK~Ni~~~W~~~fv~~~~~~~~id~~ii~p~-------LmF~T~iG~~~~~~~~~yLR--PETAQGifvnFk~~~~~~ 102 (254)
T cd00774 32 VELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE-------LMFKTSIGPVESGGNLGYLR--PETAQGIFVNFKNLLEFN 102 (254)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC-------CCEECCCCCCCCCCCCEEEC--HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999998743798799541003663-------22001215655898603536--345347798789999964
Q ss_pred HHH----HHHHHHHHCCCCCCCCCC---CCEEEECEEECCCCHH
Q ss_conf 688----999886424567775448---4300200011577657
Q gi|254781066|r 94 EEK----IFCFAHAWRNGEQGCLHQ---PEFTMLEWYRAHESYE 130 (355)
Q Consensus 94 ~~r----vyqig~~FRaE~~~~rHl---pEFtmLE~e~af~d~~ 130 (355)
T Consensus 103 r~kLPFGiaQIGk~FRNEIsPr~~l~R~REF~q~EiE~-F~~P~ 145 (254)
T cd00774 103 RRKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEF-FVDPE 145 (254)
T ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCCHHCHHHHEEEE-EECCC
T ss_conf 88888445654202267347776754000002125788-85798