HHsearch alignment for GI: 254781066 and conserved domain: pfam00152

>pfam00152 tRNA-synt_2 tRNA synthetases class II (D, K and N).
Probab=100.00  E-value=0  Score=622.84  Aligned_cols=317  Identities=26%  Similarity=0.299  Sum_probs=261.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             48999999999999999999879889847821056898544541241024788678320000285899998987446889
Q gi|254781066|r   18 RRPFLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELIIQDHIRKPLYLQTSPEFSCKKLLAAGEEKI   97 (355)
Q Consensus        18 ~R~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~g~~~~~~f~t~~~~~~~~~~~~yL~~SPql~lK~ll~~G~~rv   97 (355)
T Consensus        18 ~~~~l~~Rs~i~~~iR~ff~~~~f~EV~TP~L~~~~~e~-~a~~F~~~----~~~~~~~yL~~Spel~~k~ll~~g~~rV   92 (341)
T pfam00152        18 MQANLKLRSKIIRAIREFLDERGFLEVETPILTKSTPEG-GARDFLVP----KFYAKEAYLPQSPQLYKQLLMVAGFDRV   92 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC-CCCEEEEC----CCCCCCEEECCCHHHHHHHHHHCCCCCC
T ss_conf             899999999999999999998898998798200558987-77664502----6789823405488999999986588763


Q ss_pred             HHHHHHHCCCCC-CCCCCCCEEEECEEECCCCHHHHHHHHHHHHHHHHHHHCCC-EECCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             998864245677-75448430020001157765787775578887766641883-0002234332467732078888656
Q gi|254781066|r   98 FCFAHAWRNGEQ-GCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRCAAEVANQK-IFSFQNVNCNPFSEPEYITVAEAFA  175 (355)
Q Consensus        98 yqig~~FRaE~~-~~rHlpEFtmLE~e~af~d~~dlm~~~E~li~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~e~~~  175 (355)
T Consensus        93 fei~~~FR~E~~~t~rH~~EFtmlE~y~a~~d~~d~m~~~E~li~~i~~~v~~~~~~~~~~~~~~~~~~f~rity~ea~~  172 (341)
T pfam00152        93 FQIAPCFRDEDLRTDRHPPEFTQLDLEMSFVDYEDVMDLTEDLIKYVFKEVKGKTEKGELLLGIELPEPFPRITYAEAIE  172 (341)
T ss_pred             EEEECHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEHHHHHH
T ss_conf             79723202798988655077887767553599999999999999999999863440244124554789844742999999


Q ss_pred             HHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCEECCCCC---CCCCCCCCCCCHHHHHHCCCC
Q ss_conf             66087653234555623279999999976887787653478987664300362237---675443257688886413678
Q gi|254781066|r  176 RYANIDLGTTLDNPDQPDRHLLYLQAQQAGIRVAHDDTWSDIFSRILIEKIEPNLG---INCCTILDRYPAPESALANIY  252 (355)
Q Consensus       176 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ie~~l~---~~~pvfi~~yP~~~~plak~~  252 (355)
T Consensus       173 ~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~p~fv~dyP~~~~pf~~~~  245 (341)
T pfam00152       173 RYGSDKPDLRF-------GLELKDVTEIKFEDAALNGGSNKLLGALRSELGERLLGDENLDNPVFVTDFPLFKRPFYMPK  245 (341)
T ss_pred             HHCCCCCCCCC-------HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
T ss_conf             97199988688-------79999999984422333455244899999999888755303786199988884438666867


Q ss_pred             -CCCCCCCCCCEEEECCEECCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC-CCCCCCEEECCHHHHH
Q ss_conf             -77836330220223671225640210699999999999999997288853010189999861-8896324531599998
Q gi|254781066|r  253 -PADPRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLACLT-EMPQSSGIAMGFDRLV  330 (355)
Q Consensus       253 -~~~~~va~rfdl~i~G~El~ng~~El~d~~~q~~rf~~q~~~k~~~~~e~~~~D~~fl~al~-G~PPhgG~glGidRLv  330 (355)
T Consensus       246 ~~~~~~~a~rFel~~~G~Ei~nG~~el~d~~~~~~rf~~~~~----~~~~~~~~d~~yl~a~~~G~PP~~G~glGidRL~  321 (341)
T pfam00152       246 DEDPPGLAERFDLVLNGGEIGGGSIRIHDPEEQRKRFEELGL----DPEEAEEKFGFYLDALKYGMPPHGGIGLGLDRLV  321 (341)
T ss_pred             CCCCCCCHHEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHH
T ss_conf             877765012157526974982575345999999999998198----9023356589999998669799705657899999


Q ss_pred             HHHHCCCCHHHHCCCCCCCC
Q ss_conf             99815597131115856487
Q gi|254781066|r  331 MLVTGANNINEVIWTPFSQS  350 (355)
Q Consensus       331 m~l~g~~~Irdvi~FP~~r~  350 (355)
T Consensus       322 m~l~g~~~Irdv~~FPr~~~  341 (341)
T pfam00152       322 MLLTGLESIREVIAFPKTRK  341 (341)
T ss_pred             HHHCCCCCHHHCCCCCCCCC
T ss_conf             99808994887267899999