HHsearch alignment for GI: 254781066 and conserved domain: pfam00152
>pfam00152 tRNA-synt_2 tRNA synthetases class II (D, K and N).
Probab=100.00 E-value=0 Score=622.84 Aligned_cols=317 Identities=26% Similarity=0.299 Sum_probs=261.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 48999999999999999999879889847821056898544541241024788678320000285899998987446889
Q gi|254781066|r 18 RRPFLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELIIQDHIRKPLYLQTSPEFSCKKLLAAGEEKI 97 (355)
Q Consensus 18 ~R~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~g~~~~~~f~t~~~~~~~~~~~~yL~~SPql~lK~ll~~G~~rv 97 (355)
T Consensus 18 ~~~~l~~Rs~i~~~iR~ff~~~~f~EV~TP~L~~~~~e~-~a~~F~~~----~~~~~~~yL~~Spel~~k~ll~~g~~rV 92 (341)
T pfam00152 18 MQANLKLRSKIIRAIREFLDERGFLEVETPILTKSTPEG-GARDFLVP----KFYAKEAYLPQSPQLYKQLLMVAGFDRV 92 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC-CCCEEEEC----CCCCCCEEECCCHHHHHHHHHHCCCCCC
T ss_conf 899999999999999999998898998798200558987-77664502----6789823405488999999986588763
Q ss_pred HHHHHHHCCCCC-CCCCCCCEEEECEEECCCCHHHHHHHHHHHHHHHHHHHCCC-EECCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 998864245677-75448430020001157765787775578887766641883-0002234332467732078888656
Q gi|254781066|r 98 FCFAHAWRNGEQ-GCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRCAAEVANQK-IFSFQNVNCNPFSEPEYITVAEAFA 175 (355)
Q Consensus 98 yqig~~FRaE~~-~~rHlpEFtmLE~e~af~d~~dlm~~~E~li~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~e~~~ 175 (355)
T Consensus 93 fei~~~FR~E~~~t~rH~~EFtmlE~y~a~~d~~d~m~~~E~li~~i~~~v~~~~~~~~~~~~~~~~~~f~rity~ea~~ 172 (341)
T pfam00152 93 FQIAPCFRDEDLRTDRHPPEFTQLDLEMSFVDYEDVMDLTEDLIKYVFKEVKGKTEKGELLLGIELPEPFPRITYAEAIE 172 (341)
T ss_pred EEEECHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEHHHHHH
T ss_conf 79723202798988655077887767553599999999999999999999863440244124554789844742999999
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCEECCCCC---CCCCCCCCCCCHHHHHHCCCC
Q ss_conf 66087653234555623279999999976887787653478987664300362237---675443257688886413678
Q gi|254781066|r 176 RYANIDLGTTLDNPDQPDRHLLYLQAQQAGIRVAHDDTWSDIFSRILIEKIEPNLG---INCCTILDRYPAPESALANIY 252 (355)
Q Consensus 176 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ie~~l~---~~~pvfi~~yP~~~~plak~~ 252 (355)
T Consensus 173 ~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~p~fv~dyP~~~~pf~~~~ 245 (341)
T pfam00152 173 RYGSDKPDLRF-------GLELKDVTEIKFEDAALNGGSNKLLGALRSELGERLLGDENLDNPVFVTDFPLFKRPFYMPK 245 (341)
T ss_pred HHCCCCCCCCC-------HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 97199988688-------79999999984422333455244899999999888755303786199988884438666867
Q ss_pred -CCCCCCCCCCEEEECCEECCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC-CCCCCCEEECCHHHHH
Q ss_conf -77836330220223671225640210699999999999999997288853010189999861-8896324531599998
Q gi|254781066|r 253 -PADPRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLACLT-EMPQSSGIAMGFDRLV 330 (355)
Q Consensus 253 -~~~~~va~rfdl~i~G~El~ng~~El~d~~~q~~rf~~q~~~k~~~~~e~~~~D~~fl~al~-G~PPhgG~glGidRLv 330 (355)
T Consensus 246 ~~~~~~~a~rFel~~~G~Ei~nG~~el~d~~~~~~rf~~~~~----~~~~~~~~d~~yl~a~~~G~PP~~G~glGidRL~ 321 (341)
T pfam00152 246 DEDPPGLAERFDLVLNGGEIGGGSIRIHDPEEQRKRFEELGL----DPEEAEEKFGFYLDALKYGMPPHGGIGLGLDRLV 321 (341)
T ss_pred CCCCCCCHHEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHH
T ss_conf 877765012157526974982575345999999999998198----9023356589999998669799705657899999
Q ss_pred HHHHCCCCHHHHCCCCCCCC
Q ss_conf 99815597131115856487
Q gi|254781066|r 331 MLVTGANNINEVIWTPFSQS 350 (355)
Q Consensus 331 m~l~g~~~Irdvi~FP~~r~ 350 (355)
T Consensus 322 m~l~g~~~Irdv~~FPr~~~ 341 (341)
T pfam00152 322 MLLTGLESIREVIAFPKTRK 341 (341)
T ss_pred HHHCCCCCHHHCCCCCCCCC
T ss_conf 99808994887267899999