PSIBLAST alignment of GI: 254781066 and protein with PDB id: 1bbu
>gi|11513774|pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine Length = 504
>gi|11513776|pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss) Length = 504
Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats.
Identities = 96/367 (26%), Positives = 165/367 (44%), Gaps = 26/367 (7%)
Query: 1 MHQIPSQPWW--NRDFHYRRR-----------PFLLKRNMIQSSLREYFVENQFIEIDSM 47
+ +P + +++ YR+R R+ I S +R++ V F+E+++
Sbjct: 149 LRPLPDKFHGLQDQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETP 208
Query: 48 SLQYSPGNETHIRAFSTELIIQDHIRKPLYLQTSPEFSCKKLLAAGEEKIFCFAHAWRNG 107
+Q PG R F T + + +YL+ +PE K+L+ G E++F +RN
Sbjct: 209 MMQVIPGGAA-ARPFITH---HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNE 264
Query: 108 EQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRCAAE-VANQKIFSFQNVNCNPFSEPE 166
H PEFTM+E Y A+ Y+ L++ ++ R A+ + + ++ +V + E
Sbjct: 265 GISVRHNPEFTMMELYMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFE 324
Query: 167 YITVAEAFARYANIDLGTTLDNPDQPDRHLLYLQAQQAGIRVAHDDTWSDIFSRILIEKI 226
+T+ EA +Y D D + A+ GI V I + I E
Sbjct: 325 KLTMREAIKKY-----RPETDMADLDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFEEVA 379
Query: 227 EPNLGINCCTILDRYPAPESALANIYPADPRFTKRFELYACNIELCNACDELLDPIEQRH 286
E + + T + YPA S LA +P T RFE + E+ N EL D +Q
Sbjct: 380 EAH--LIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAQ 437
Query: 287 RFEKEMQEKKKIYNETYPIDEDFLACLT-EMPQSSGIAMGFDRLVMLVTGANNINEVIWT 345
RF ++ K +E DED++ L +P ++G+ +G DR+VML T ++ I +VI
Sbjct: 438 RFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILF 497
Query: 346 PFSQSNQ 352
P + +
Sbjct: 498 PAMRPVK 504