PSIBLAST alignment of GI: 254781066 and protein with PDB id: 1bbu

>gi|11513774|pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine Length = 504
>gi|11513776|pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss) Length = 504
 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 96/367 (26%), Positives = 165/367 (44%), Gaps = 26/367 (7%)

Query: 1   MHQIPSQPWW--NRDFHYRRR-----------PFLLKRNMIQSSLREYFVENQFIEIDSM 47
           +  +P +     +++  YR+R                R+ I S +R++ V   F+E+++ 
Sbjct: 149 LRPLPDKFHGLQDQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETP 208

Query: 48  SLQYSPGNETHIRAFSTELIIQDHIRKPLYLQTSPEFSCKKLLAAGEEKIFCFAHAWRNG 107
            +Q  PG     R F T     + +   +YL+ +PE   K+L+  G E++F     +RN 
Sbjct: 209 MMQVIPGGAA-ARPFITH---HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNE 264

Query: 108 EQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRCAAE-VANQKIFSFQNVNCNPFSEPE 166
                H PEFTM+E Y A+  Y+ L++   ++ R  A+ +  +   ++ +V  +     E
Sbjct: 265 GISVRHNPEFTMMELYMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFE 324

Query: 167 YITVAEAFARYANIDLGTTLDNPDQPDRHLLYLQAQQAGIRVAHDDTWSDIFSRILIEKI 226
            +T+ EA  +Y         D  D  +       A+  GI V        I + I  E  
Sbjct: 325 KLTMREAIKKY-----RPETDMADLDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFEEVA 379

Query: 227 EPNLGINCCTILDRYPAPESALANIYPADPRFTKRFELYACNIELCNACDELLDPIEQRH 286
           E +  +   T +  YPA  S LA     +P  T RFE +    E+ N   EL D  +Q  
Sbjct: 380 EAH--LIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAQ 437

Query: 287 RFEKEMQEKKKIYNETYPIDEDFLACLT-EMPQSSGIAMGFDRLVMLVTGANNINEVIWT 345
           RF  ++  K    +E    DED++  L   +P ++G+ +G DR+VML T ++ I +VI  
Sbjct: 438 RFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILF 497

Query: 346 PFSQSNQ 352
           P  +  +
Sbjct: 498 PAMRPVK 504