RPSBLAST alignment for GI: 254781066 and conserved domain: TIGR00459

>gnl|CDD|129551 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences. Length = 583

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 42/186 (22%)

Query: 18  RRP----FLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFST-----ELII 68
           RRP     L  R+ +  ++R +  +  F+EI           ET +   ST     + ++
Sbjct: 130 RRPEMQQRLKLRHKVTKAVRNFLDQQGFLEI-----------ETPMLTKSTPEGARDYLV 178

Query: 69  QDHIRKPLY--LQTSPEFSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAH 126
              + K  +  L  SP+   + L+ +G ++ +  A  +R+ +     QPEFT ++   + 
Sbjct: 179 PSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQPEFTQIDMEMSF 238

Query: 127 ESYEQLMKDCMNIIRCAAEVANQKIFS-FQNVNCN-PFSEPEYITVAEAFARYANIDLGT 184
            + E +M+          E     +F   + ++   PF     +T AEA  RY +     
Sbjct: 239 MTQEDVME--------LIEKLVSHVFLEVKGIDLKKPFPV---MTYAEAMERYGS----- 282

Query: 185 TLDNPD 190
             D PD
Sbjct: 283 --DKPD 286