RPSBLAST alignment for GI: 254781066 and conserved domain: TIGR00499

>gnl|CDD|129590 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. Length = 496

 Score =  170 bits (433), Expect = 5e-43
 Identities = 113/330 (34%), Positives = 177/330 (53%), Gaps = 16/330 (4%)

Query: 22  LLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELIIQDHIRKPLYLQTS 81
            L R+ I  ++R +  +  FIE+++  LQ  PG     R F T     + +   LYL+ +
Sbjct: 172 FLVRSKIIKAIRRFLDDRGFIEVETPMLQVIPGGAN-ARPFITH---HNALDMDLYLRIA 227

Query: 82  PEFSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIR 141
           PE   K+L+  G EK++     +RN      H PEFTM+E+Y+A+  YE LM    N+ +
Sbjct: 228 PELYLKRLIVGGFEKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAYADYEDLMDLTENLFK 287

Query: 142 CAA-EVANQKIFSFQNVNCNPFSEP-EYITVAEAFARYANIDLGTTLDNPDQPDRHLLYL 199
             A E+      ++  +  + F +P + IT+ EA  +Y   D+ T +D  D  D      
Sbjct: 288 FLAQELLGTTKITYGELEID-FKKPFKRITMVEAIKKY---DMETGIDFDDLKDFETAKA 343

Query: 200 QAQQAGIRVAHDDTWS--DIFSRILIEKIEPNLGINCCTILDRYPAPESALANIYPADPR 257
            A++ GI VA + + +   I + +  + +E  L I   T +  YPA  S LA   P++P 
Sbjct: 344 LAKKIGIEVA-EKSLTLGHILNELFEQFLEHTL-IQP-TFITHYPAEISPLAKRNPSNPE 400

Query: 258 FTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLACLTE-M 316
           FT RFEL+    E+ NA  EL DP++QR RFE+++ EK+   +E   +DEDF+  L   M
Sbjct: 401 FTDRFELFIAGKEIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDEDFVEALEYGM 460

Query: 317 PQSSGIAMGFDRLVMLVTGANNINEVIWTP 346
           P + G+ +G DRLVML+T + +I +VI  P
Sbjct: 461 PPTGGLGIGIDRLVMLLTDSKSIRDVILFP 490