RPSBLAST alignment of GI: 254781066 and protein with PDBid: 1nnh
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 Length = 294
Score = 110 bits (277), Expect = 4e-25
Identities = 46/331 (13%), Positives = 85/331 (25%), Gaps = 66/331 (19%)
Query: 19 RPFLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFS-TELIIQDHIRKPLY 77
P L + I + ++FV+ F + + + A E + +
Sbjct: 12 SPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGVKMR 71
Query: 78 LQTSPEFSCKKLLAAGEEKIFCFAHAWRN---GEQGCLHQPEFTMLEWYRAHESYEQLMK 134
L S + +A G +KIF + R + H EFT L++ E +M+
Sbjct: 72 LTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMR 131
Query: 135 DCMNIIRCAAEVANQKIFSFQNVNCNPFSEPEYITVAEAFARYANIDLGTTLDNPDQPDR 194
++ K + E +E
Sbjct: 132 LIERLVYGLFR----KAEEWTGREFPKTKRFEVFEYSE---------------------- 165
Query: 195 HLLYLQAQQAGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDRYPAPESALANIYPA 254
+ E EP IN
Sbjct: 166 ----------------VLEEFGSDEKASQEMEEPFWIINIPREFYDREVD---------- 199
Query: 255 DPRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLACLT 314
L E+ + + + + + K + +L
Sbjct: 200 GFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSF--------RPYLEIAK 251
Query: 315 --EMPQSSGIAMGFDRLVMLVTGANNINEVI 343
++ S+G +G +RLV + GA +I EV
Sbjct: 252 AGKLKPSAGAGIGVERLVRFIVGAKHIAEVQ 282