BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781066|ref|YP_003065479.1| putative lysyl-tRNA synthetase protein [Candidatus Liberibacter asiaticus str. psy62] (355 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781066|ref|YP_003065479.1| putative lysyl-tRNA synthetase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 355 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/355 (100%), Positives = 355/355 (100%) Query: 1 MHQIPSQPWWNRDFHYRRRPFLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIR 60 MHQIPSQPWWNRDFHYRRRPFLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIR Sbjct: 1 MHQIPSQPWWNRDFHYRRRPFLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIR 60 Query: 61 AFSTELIIQDHIRKPLYLQTSPEFSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTML 120 AFSTELIIQDHIRKPLYLQTSPEFSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTML Sbjct: 61 AFSTELIIQDHIRKPLYLQTSPEFSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTML 120 Query: 121 EWYRAHESYEQLMKDCMNIIRCAAEVANQKIFSFQNVNCNPFSEPEYITVAEAFARYANI 180 EWYRAHESYEQLMKDCMNIIRCAAEVANQKIFSFQNVNCNPFSEPEYITVAEAFARYANI Sbjct: 121 EWYRAHESYEQLMKDCMNIIRCAAEVANQKIFSFQNVNCNPFSEPEYITVAEAFARYANI 180 Query: 181 DLGTTLDNPDQPDRHLLYLQAQQAGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDR 240 DLGTTLDNPDQPDRHLLYLQAQQAGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDR Sbjct: 181 DLGTTLDNPDQPDRHLLYLQAQQAGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDR 240 Query: 241 YPAPESALANIYPADPRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYN 300 YPAPESALANIYPADPRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYN Sbjct: 241 YPAPESALANIYPADPRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYN 300 Query: 301 ETYPIDEDFLACLTEMPQSSGIAMGFDRLVMLVTGANNINEVIWTPFSQSNQEEI 355 ETYPIDEDFLACLTEMPQSSGIAMGFDRLVMLVTGANNINEVIWTPFSQSNQEEI Sbjct: 301 ETYPIDEDFLACLTEMPQSSGIAMGFDRLVMLVTGANNINEVIWTPFSQSNQEEI 355 >gi|254781118|ref|YP_003065531.1| lysyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 502 Score = 144 bits (364), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 107/332 (32%), Positives = 168/332 (50%), Gaps = 28/332 (8%) Query: 24 KRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELIIQDHIRKPLYLQTSPE 83 +R+++ S +R + + F+E+++ LQ G T F T + ++ +YL+ +PE Sbjct: 178 QRSLLISQIRHFMEKKGFMEVETPILQPIYGGAT-ADPFKTH---HNILKADMYLRIAPE 233 Query: 84 FSCKKLLAAG-EEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRC 142 K++L +G +++F +RN H PEFTM+E Y A+ Y +MK ++ Sbjct: 234 LYLKRVLISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAYWAYTDYRDMMKLVEDLCHN 293 Query: 143 AAEVANQKIFSFQNVNCNPFSEPEYITVAEAFARYANIDL---GTTLD----NPDQPDRH 195 A+ + PF E + I+ FA + + L T LD DQ R Sbjct: 294 LAK-------TLHGTTDIPFGE-KVISFKAPFACKSMLQLVKEATGLDFMLLKSDQEAR- 344 Query: 196 LLYLQAQQAGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDRYPAPESALANIYPAD 255 + AQ GI V +D W ++ I EKIE N+ +N I D +P S A + Sbjct: 345 ---VAAQSIGITVENDALWGEVMMTIFEEKIEKNI-VNPTHITD-FPKDISPFAKEVAGE 399 Query: 256 PRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLACLT- 314 R +RFE Y E+CNA EL DP+EQR R E+++++ + E +DEDFL +T Sbjct: 400 KRLVERFETYCNGWEICNAFSELNDPVEQRIRMEQQVEQSHQ-RGEHTILDEDFLDAMTY 458 Query: 315 EMPQSSGIAMGFDRLVMLVTGANNINEVIWTP 346 MP +SG+ +G DRL+ML+T A +I +VI P Sbjct: 459 GMPPASGLGLGIDRLIMLLTNAPSIRDVILFP 490 >gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 622 Score = 42.4 bits (98), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 19/35 (54%), Positives = 23/35 (65%) Query: 316 MPQSSGIAMGFDRLVMLVTGANNINEVIWTPFSQS 350 MP GIA G DR+VML+ GA N+ EV P SQ+ Sbjct: 533 MPPHGGIAAGIDRIVMLLLGAKNVREVSLFPMSQN 567 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.136 0.427 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 230,231 Number of Sequences: 1233 Number of extensions: 9364 Number of successful extensions: 25 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 7 length of query: 355 length of database: 328,796 effective HSP length: 75 effective length of query: 280 effective length of database: 236,321 effective search space: 66169880 effective search space used: 66169880 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 39 (19.6 bits)