HHsearch alignment for GI: 254781067 and conserved domain: cd04463
>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain. The EF-like superfamily contains the bacterial translation elongation factor P and its archeal and eukaryotic homologs, aIF5A and eIF5A. All proteins in this superfamily contain an S1 domain, which binds RNA or single-stranded DNA and often interacts with the ribosome. Hex-1, the SI-like domain of which is also found in this group, is structurally homologous to eIF5A and might have evolved from an ancestral eIF5A through gene duplication.
Probab=95.05 E-value=0.045 Score=33.51 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=30.9
Q ss_pred EEEEEEEC--CCEEECCCCC-------CCCCEEEEECCCCCEEHH
Q ss_conf 00089937--9599847401-------688799998899724021
Q gi|254781067|r 151 YKPAILSN--DIRTTVPPHI-------NIGDDIVILTEDNSYVER 186 (189)
Q Consensus 151 ~K~A~let--G~~i~VP~FI-------~~Gd~IkV~T~~g~Y~~R 186 (189)
T Consensus 11 ~~~~~Md~e~~~~~~~p~~~~~~~E~f~~G~~vlv~~~~Gq~~~v 55 (55)
T cd04463 11 SKPVTMDLETYEVVQVPPPVDQSFESFEPGEVVLVDTRTGQYVGV 55 (55)
T ss_pred CEEEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCEECC
T ss_conf 723898712136772389856442234896089997466627439