HHsearch results for GI: 254781067 and protein with PDBid: 1bkb_A
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=1.9e-37 Score=248.84 Aligned_cols=126 Identities=20% Similarity=0.253 Sum_probs=119.7
Q ss_pred CCE--EEHHHCCCCCEEEECCEEEEEEEEEEECCCC-CCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEEE
Q ss_conf 923--6643216775899889379999987536888-7638999999824687100134278720010105640578996
Q gi|254781067|r 1 MVK--VIASAVRKGNVLDVDGKLYIVLVAKNFHPGK-GTPITQVEMRRISDGVKVSNRWRTTEQVERAFVEDQRFQFLYQ 77 (189)
Q Consensus 1 m~~--i~an~lk~G~~i~~dg~~~~V~~~~~~kpgk-g~a~v~~klknL~tG~~~e~~f~~~ekve~~~ie~~~~qylY~ 77 (189)
|++ |+||+||+|++|++||+||+|++++|++||| |+|++|+++|||.||++.+.+|+++|+++.|+++++++||||.
T Consensus 4 mat~~i~a~~lkkG~~i~~dg~p~~V~~~~~~kpGk~G~a~~~~k~k~l~tG~~~e~~~~~~e~ve~~~v~~~~~q~lY~ 83 (136)
T 1bkb_A 4 MSTKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSV 83 (136)
T ss_dssp CCCEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEEE
T ss_pred CCCCEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEEEEEEEE
T ss_conf 30127999997568899999999999999988588777438999999825896999981387588240484434899995
Q ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHH-HHCCCCCEEEEEEECCEEEEEC
Q ss_conf 198899994688764321154300133-2013786156897667774401
Q gi|254781067|r 78 DQEGFHFMNPETYDQVTVSEEVIGDQK-VYFQEGMEVKLLIHEGVALSVE 126 (189)
Q Consensus 78 dg~~~~FMd~etyeqi~i~~~~ig~~~-~fL~eg~~v~i~~~~~~~i~i~ 126 (189)
||+.|+|||+|||||++||.+.+|+.. .||.||++|+++.++|+.+-+.
T Consensus 84 d~~~~~fMd~etyEq~~l~~~~vg~~~k~~l~eg~eV~v~~~~g~~~i~~ 133 (136)
T 1bkb_A 84 SGDVIQLMDMRDYKTIEVPMKYVEEEAKGRLAPGAEVEVWQILDRYKIIR 133 (136)
T ss_dssp CSSEEEEEETTTCCEEEEEGGGBCHHHHTTCCTTCEEEEEEETTEEEEEE
T ss_pred CCCEEEEECCCCHHHEECCHHHHHHHHHHHCCCCCEEEEEEECCCEEEEE
T ss_conf 59999990499834178676785188997504999999999889799999