HHSEARCH alignment of GI: 254781067 and SCOP domain: d1iz6a2

Alignment
>d1iz6a2 b.40.4.5 (A:71-137) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=97.06  E-value=0.00062  Score=42.09  Aligned_cols=56  Identities=18%  Similarity=0.312  Sum_probs=45.9

Q ss_pred             ECCCEEEEEEEECCEEEEEECCCCCCCCCCHHH--HHHHHHHCCCCCEEEEEEECCEE
Q ss_conf             056405789961988999946887643211543--00133201378615689766777
Q gi|254781067|r   67 VEDQRFQFLYQDQEGFHFMNPETYDQVTVSEEV--IGDQKVYFQEGMEVKLLIHEGVA  122 (189)
Q Consensus        67 ie~~~~qylY~dg~~~~FMd~etyeqi~i~~~~--ig~~~~fL~eg~~v~i~~~~~~~  122 (189)
                      ++++..|.+-..|+...+||++|||.+++|.+.  -++...=|.+|.+|.-.-.-|+-
T Consensus         1 IeKk~aQVlsi~Gd~vQ~MD~etyeTfelpi~~~v~ee~~~~l~~G~eVeYwe~mGr~   58 (67)
T d1iz6a2           1 IDKKTAQVIAITPDTVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEYWETLGRI   58 (67)
T ss_dssp             CEEEEEEEEEECSSEEEEECTTTCCEEEEEHHHHBCGGGTTTCCTTCEEEEEEETTEE
T ss_pred             CCCCEEEEEEECCCEEEEEECCCCEEEEEECCCCCCHHHHHCCCCCCEEEEEEECCCE
T ss_conf             9553258999748858996067711389855878657787345799779998435948


SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]