Query gi|254781068|ref|YP_003065481.1| hypothetical protein CLIBASIA_04850 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 43
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Mon May 30 04:24:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781068.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3502 consensus 43.7 8.9 0.00023 20.4 0.7 40 1-40 1-48 (66)
2 TIGR02179 PorD_KorD 2-oxoacid: 37.6 14 0.00036 19.5 0.9 18 10-28 42-62 (84)
3 KOG1016 consensus 32.5 15 0.00039 19.3 0.4 29 5-34 249-277 (1387)
4 PRK05337 beta-hexosaminidase; 24.8 21 0.00055 18.6 0.1 13 11-23 21-33 (336)
5 TIGR01132 pgm phosphoglucomuta 20.6 13 0.00034 19.6 -1.6 14 1-14 283-296 (553)
6 COG3017 LolB Outer membrane li 14.1 1.3E+02 0.0034 14.8 2.2 33 8-40 57-89 (206)
7 TIGR01252 acetolac_decarb alph 12.2 95 0.0024 15.5 0.9 25 10-35 177-201 (234)
8 PRK10226 L-asparaginase; Provi 12.1 40 0.001 17.3 -1.0 13 31-43 99-111 (313)
9 cd04513 Glycosylasparaginase G 10.0 52 0.0013 16.8 -1.0 13 31-43 76-88 (263)
10 pfam08688 ASD1 Apx/Shroom doma 9.5 69 0.0018 16.2 -0.5 23 12-34 120-142 (181)
No 1
>KOG3502 consensus
Probab=43.73 E-value=8.9 Score=20.45 Aligned_cols=40 Identities=38% Similarity=0.615 Sum_probs=25.8
Q ss_pred CCCCCCEEEEEECCCC------CCE--EEEEECCCHHHHHHCCCCCCE
Q ss_conf 9877845899805411------208--997511101133320368202
Q gi|254781068|r 1 MDSSSPIALAIQNRQI------GGV--VRFDYDFKKKSYQRNIKNPIQ 40 (43)
Q Consensus 1 mdssspialaiqnrqi------ggv--vrfdydfkkksyqrniknpiq 40 (43)
||++.|+.||--..-+ |++ ||..+--.+.|.+||.|.|..
T Consensus 1 m~~~~~~~larVtkVlGRTgsqGq~tqvrvef~~~~RsIirnVKgPvr 48 (66)
T KOG3502 1 MDSKQPIKLARVTKVLGRTGSQGQCTQVRVEFMDTSRSIIRNVKGPVR 48 (66)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHCCCCCC
T ss_conf 974330457655442233578784789987752665888986458743
No 2
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family; InterPro: IPR011898 A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This entry describes the delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.; GO: 0016625 oxidoreductase activity acting on the aldehyde or oxo group of donors iron-sulfur protein as acceptor, 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport.
Probab=37.64 E-value=14 Score=19.51 Aligned_cols=18 Identities=56% Similarity=0.852 Sum_probs=12.5
Q ss_pred EEECCCCCC---EEEEEECCCH
Q ss_conf 980541120---8997511101
Q gi|254781068|r 10 AIQNRQIGG---VVRFDYDFKK 28 (43)
Q Consensus 10 aiqnrqigg---vvrfdydfkk 28 (43)
+|+-+ -|| .++|||||=|
T Consensus 42 ~I~~~-e~~~~~~~~iDYdYCK 62 (84)
T TIGR02179 42 AIQED-EGGDEKKVEIDYDYCK 62 (84)
T ss_pred EEECC-CCCEEEEEEECCCCCC
T ss_conf 77615-8932677676487378
No 3
>KOG1016 consensus
Probab=32.50 E-value=15 Score=19.32 Aligned_cols=29 Identities=38% Similarity=0.591 Sum_probs=21.4
Q ss_pred CCEEEEEECCCCCCEEEEEECCCHHHHHHC
Q ss_conf 845899805411208997511101133320
Q gi|254781068|r 5 SPIALAIQNRQIGGVVRFDYDFKKKSYQRN 34 (43)
Q Consensus 5 spialaiqnrqiggvvrfdydfkkksyqrn 34 (43)
+-+|-+++-.|||| +||-||---.|..|-
T Consensus 249 pqla~v~kPHQiGG-iRFlYDN~iESl~ry 277 (1387)
T KOG1016 249 PQLAHVLKPHQIGG-IRFLYDNTIESLGRY 277 (1387)
T ss_pred HHHHHHCCCCCCCC-EEEEHHHHHHHHHHC
T ss_conf 66673258100175-787503178887630
No 4
>PRK05337 beta-hexosaminidase; Provisional
Probab=24.80 E-value=21 Score=18.63 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=7.7
Q ss_pred EECCCCCCEEEEE
Q ss_conf 8054112089975
Q gi|254781068|r 11 IQNRQIGGVVRFD 23 (43)
Q Consensus 11 iqnrqiggvvrfd 23 (43)
|++.++|||.-|.
T Consensus 21 l~~~~vgGvILF~ 33 (336)
T PRK05337 21 LAHPLVGGVILFA 33 (336)
T ss_pred HHHCCCCEEEEEC
T ss_conf 8716873899827
No 5
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific; InterPro: IPR005852 Phosphoglucomutase, alpha-D-glucose phosphate-specific () links the anaerobic or aerobic glycolysis of glucose-6-phosphate and glucose-1-phosphate produced by various glycan phosphorylases by catalysing the transfer of a phosphate group between C-1 and C-6 of glucose . Alpha-D-glucose 1-phosphate = alpha-D-glucose 6-phosphate.; GO: 0004614 phosphoglucomutase activity, 0005975 carbohydrate metabolic process.
Probab=20.62 E-value=13 Score=19.60 Aligned_cols=14 Identities=50% Similarity=0.437 Sum_probs=8.9
Q ss_pred CCCCCCEEEEEECC
Q ss_conf 98778458998054
Q gi|254781068|r 1 MDSSSPIALAIQNR 14 (43)
Q Consensus 1 mdssspialaiqnr 14 (43)
||.|||.|+|---+
T Consensus 283 MDCSSp~AMAgL~~ 296 (553)
T TIGR01132 283 MDCSSPYAMAGLLA 296 (553)
T ss_pred CCCCCHHHHHHHHH
T ss_conf 44687779999999
No 6
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=14.07 E-value=1.3e+02 Score=14.81 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=26.3
Q ss_pred EEEEECCCCCCEEEEEECCCHHHHHHCCCCCCE
Q ss_conf 899805411208997511101133320368202
Q gi|254781068|r 8 ALAIQNRQIGGVVRFDYDFKKKSYQRNIKNPIQ 40 (43)
Q Consensus 8 alaiqnrqiggvvrfdydfkkksyqrniknpiq 40 (43)
.+++-.-+-++..||+.-..-..|.-++-||+-
T Consensus 57 ~~~yis~~q~~s~rF~Wqq~p~~y~L~Ls~pLg 89 (206)
T COG3017 57 RLAYISDQQRGSARFFWQQQPDRYRLLLSNPLG 89 (206)
T ss_pred EEEEECCCCCCEEEEEEEECCCCEEEEEECCCC
T ss_conf 379986776536889999758847999815567
No 7
>TIGR01252 acetolac_decarb alpha-acetolactate decarboxylase; InterPro: IPR005128 Alpha-acetolactate decarboxylase plays a dual role in the cell: (i) it catalyzes the second step of the acetoin pathway, (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2 and thus potentially the internal pH of cells and (ii) it controls the pool of alpha-acetolactate during leucine and valine synthesis..
Probab=12.18 E-value=95 Score=15.53 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=17.3
Q ss_pred EEECCCCCCEEEEEECCCHHHHHHCC
Q ss_conf 98054112089975111011333203
Q gi|254781068|r 10 AIQNRQIGGVVRFDYDFKKKSYQRNI 35 (43)
Q Consensus 10 aiqnrqiggvvrfdydfkkksyqrni 35 (43)
--+.|++||-| |||.+++-.-|-..
T Consensus 177 I~e~r~~GGHv-lDy~i~~g~l~i~~ 201 (234)
T TIGR01252 177 ISEDRTFGGHV-LDYIIDNGTLEISQ 201 (234)
T ss_pred EECCCCCCCEE-EEEEECCCCEEEEE
T ss_conf 74685108636-53286155167853
No 8
>PRK10226 L-asparaginase; Provisional
Probab=12.13 E-value=40 Score=17.31 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=8.8
Q ss_pred HHHCCCCCCEECC
Q ss_conf 3320368202059
Q gi|254781068|r 31 YQRNIKNPIQLER 43 (43)
Q Consensus 31 yqrniknpiqler 43 (43)
--++|||||++-|
T Consensus 99 ~v~~vknPI~~AR 111 (313)
T PRK10226 99 GVSHLRNPVLAAR 111 (313)
T ss_pred ECCCCCCHHHHHH
T ss_conf 3588898899999
No 9
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=9.98 E-value=52 Score=16.78 Aligned_cols=13 Identities=46% Similarity=0.598 Sum_probs=9.3
Q ss_pred HHHCCCCCCEECC
Q ss_conf 3320368202059
Q gi|254781068|r 31 YQRNIKNPIQLER 43 (43)
Q Consensus 31 yqrniknpiqler 43 (43)
--++|||||.+-|
T Consensus 76 ~v~~vknPi~~Ar 88 (263)
T cd04513 76 ALRGIKNAISVAR 88 (263)
T ss_pred CCCCCCCHHHHHH
T ss_conf 2777789999999
No 10
>pfam08688 ASD1 Apx/Shroom domain ASD1. This region is found in the actin binding protein Shroom which mediates apical contriction in epithelial cells and is required for neural tube closure. ASD1 has been implicated directly in F-actin binding.
Probab=9.54 E-value=69 Score=16.18 Aligned_cols=23 Identities=48% Similarity=0.641 Sum_probs=19.2
Q ss_pred ECCCCCCEEEEEECCCHHHHHHC
Q ss_conf 05411208997511101133320
Q gi|254781068|r 12 QNRQIGGVVRFDYDFKKKSYQRN 34 (43)
Q Consensus 12 qnrqiggvvrfdydfkkksyqrn 34 (43)
|--.|||--||.-+-||+||---
T Consensus 120 ~v~RIGgRKR~TaEQKkrSYSEP 142 (181)
T pfam08688 120 QVSRIGGRKRFTAEQKKKSYSEP 142 (181)
T ss_pred CCCCCCCCCCCCHHHHHCCCCCC
T ss_conf 76642443447887732356873
Done!