RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781068|ref|YP_003065481.1| hypothetical protein CLIBASIA_04850 [Candidatus Liberibacter asiaticus str. psy62] (43 letters) >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 30.7 bits (68), Expect = 0.081 Identities = 7/11 (63%), Positives = 9/11 (81%), Gaps = 1/11 (9%) Query: 2 DSSSPIALAIQ 12 D S+P ALAI+ Sbjct: 34 DDSAP-ALAIK 43 >2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A Length = 340 Score = 24.2 bits (51), Expect = 8.5 Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 9/31 (29%) Query: 11 IQNRQIGGVVRFDYDFKKKSYQRNIKNPIQL 41 +Q+ +GGV+ F RN + QL Sbjct: 21 LQHPTVGGVILF---------GRNYHDNQQL 42 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.136 0.377 Gapped Lambda K H 0.267 0.0433 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 356,640 Number of extensions: 9353 Number of successful extensions: 15 Number of sequences better than 10.0: 1 Number of HSP's gapped: 15 Number of HSP's successfully gapped: 2 Length of query: 43 Length of database: 5,693,230 Length adjustment: 16 Effective length of query: 27 Effective length of database: 5,305,326 Effective search space: 143243802 Effective search space used: 143243802 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.8 bits)