Query gi|254781069|ref|YP_003065482.1| hypothetical protein CLIBASIA_04855 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 43 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed Jun 1 00:03:12 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781069.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2oxn_A Beta-hexosaminidase; TI 92.7 0.024 1E-06 31.3 0.9 21 15-35 53-73 (340) 2 3bmx_A Uncharacterized lipopro 71.9 1.3 5.3E-05 23.1 1.5 26 15-40 114-139 (642) 3 1x38_A Beta-D-glucan exohydrol 20.1 21 0.0009 17.1 0.4 24 16-40 87-110 (602) 4 3kb5_A Tripartite motif-contai 12.7 74 0.0031 14.5 1.6 14 19-32 136-149 (193) 5 2wl1_A Pyrin, marenostrin; amy 12.6 75 0.0031 14.5 1.6 14 19-32 133-146 (191) 6 2fbe_A Predicted: similar to R 10.4 98 0.0041 14.0 1.6 14 19-32 130-143 (201) 7 1hq0_A CNF1, cytotoxic necroti 9.9 1.1E+02 0.0048 13.6 2.6 27 10-42 128-154 (295) 8 3f1j_A Matrix protein, GP18, P 9.8 1.1E+02 0.0048 13.6 1.8 15 17-31 20-34 (142) 9 2vok_A 52 kDa RO protein; poly 6.3 1.7E+02 0.0071 12.8 2.1 15 18-32 127-141 (188) 10 3f94_A Beta-glucosidase; (alph 4.9 1.8E+02 0.0075 12.7 0.8 23 16-39 102-124 (822) No 1 >2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A Probab=92.73 E-value=0.024 Score=31.33 Aligned_cols=21 Identities=38% Similarity=0.719 Sum_probs=18.5 Q ss_pred CCCCEEEEEEECCCEEEEEEE Q ss_conf 268669999607862323333 Q gi|254781069|r 15 SSYPLMIAIDYEGGEVSRLIC 35 (43) Q Consensus 15 ssyplmiaidyeggevsrlic 35 (43) +..||+|+||-|||.|+|+.- T Consensus 53 ~~~pllIaiDqEGG~v~rl~~ 73 (340) T 2oxn_A 53 AKRPILIGVDQEGGRVQRFRE 73 (340) T ss_dssp HSSCCEEEECEEETTEESCCT T ss_pred CCCCCEEEECCCCCEEEECCC T ss_conf 199958998158972442268 No 2 >3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycosidase, hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* Probab=71.95 E-value=1.3 Score=23.06 Aligned_cols=26 Identities=50% Similarity=0.683 Sum_probs=21.6 Q ss_pred CCCCEEEEEEECCCEEEEEEEEEEEE Q ss_conf 26866999960786232333322012 Q gi|254781069|r 15 SSYPLMIAIDYEGGEVSRLICTTVFA 40 (43) Q Consensus 15 ssyplmiaidyeggevsrlicttvfa 40 (43) ...|++|++|.|||.+.|+--.|.|. T Consensus 114 ~~iPll~~~D~e~G~~~rl~~~t~fP 139 (642) T 3bmx_A 114 PKIPLMLSIDQEGGIVTRLGEGTNFP 139 (642) T ss_dssp SSSCCEEEECCCBTTBCCCSSSCCCC T ss_pred CCCCCEEEECCCCCEEECCCCCCCCC T ss_conf 99795799805898312389987898 No 3 >1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Probab=20.13 E-value=21 Score=17.12 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=18.6 Q ss_pred CCCEEEEEEECCCEEEEEEEEEEEE Q ss_conf 6866999960786232333322012 Q gi|254781069|r 16 SYPLMIAIDYEGGEVSRLICTTVFA 40 (43) Q Consensus 16 syplmiaidyeggevsrlicttvfa 40 (43) ..|++|++|.|+|-+.|+- .|.|. T Consensus 87 gIP~l~~~D~~~G~~~~~~-~t~fP 110 (602) T 1x38_A 87 GIPMIYGIDAVHGQNNVYG-ATIFP 110 (602) T ss_dssp CCCCEEEECCSSSSTTSTT-CCCCC T ss_pred CCCCEEEEECCCCEECCCC-CCCCC T ss_conf 9884798706876047889-87674 No 4 >3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens} Probab=12.75 E-value=74 Score=14.54 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=11.9 Q ss_pred EEEEEEECCCEEEE Q ss_conf 69999607862323 Q gi|254781069|r 19 LMIAIDYEGGEVSR 32 (43) Q Consensus 19 lmiaidyeggevsr 32 (43) +-|.+|||.|++|= T Consensus 136 IGV~LDye~G~lsF 149 (193) T 3kb5_A 136 IGLYLSFGDGVLSF 149 (193) T ss_dssp EEEEEETTTTEEEE T ss_pred EEEEEECCCCEEEE T ss_conf 99997468998999 No 5 >2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens} Probab=12.60 E-value=75 Score=14.51 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=11.8 Q ss_pred EEEEEEECCCEEEE Q ss_conf 69999607862323 Q gi|254781069|r 19 LMIAIDYEGGEVSR 32 (43) Q Consensus 19 lmiaidyeggevsr 32 (43) +-|-.|||.|++|= T Consensus 133 IGV~LD~e~G~lSF 146 (191) T 2wl1_A 133 VGIFVDYRVGSISF 146 (191) T ss_dssp EEEEEETTTTEEEE T ss_pred EEEEEECCCCEEEE T ss_conf 99988527998999 No 6 >2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22 Probab=10.41 E-value=98 Score=13.95 Aligned_cols=14 Identities=14% Similarity=0.057 Sum_probs=11.7 Q ss_pred EEEEEEECCCEEEE Q ss_conf 69999607862323 Q gi|254781069|r 19 LMIAIDYEGGEVSR 32 (43) Q Consensus 19 lmiaidyeggevsr 32 (43) +-|-.|||.|++|= T Consensus 130 IGV~LDye~G~lSF 143 (201) T 2fbe_A 130 VGIFLDVGMRSIAF 143 (201) T ss_dssp EEEEEETTTTEEEE T ss_pred EEEEEECCCCEEEE T ss_conf 89998727998999 No 7 >1hq0_A CNF1, cytotoxic necrotizing factor 1; beta sandwich, RHO deamidase, RHO transglutaminase, toxin; 1.83A {Escherichia coli} SCOP: d.194.1.1 PDB: 1hzg_A Probab=9.90 E-value=1.1e+02 Score=13.63 Aligned_cols=27 Identities=33% Similarity=0.663 Sum_probs=17.5 Q ss_pred HHHHHCCCCEEEEEEECCCEEEEEEEEEEEEEE Q ss_conf 321212686699996078623233332201230 Q gi|254781069|r 10 VNSVESSYPLMIAIDYEGGEVSRLICTTVFAIT 42 (43) Q Consensus 10 vnsvessyplmiaidyeggevsrlicttvfait 42 (43) .+.++..+|+.|. +|..|- ||+|+|+. T Consensus 128 L~~I~~g~pvlit----sG~LSG--CT~v~A~K 154 (295) T 1hq0_A 128 LEEVQEGKPVIIT----SGNLSG--CTTIVARK 154 (295) T ss_dssp GGGCBTTBCEEEE----CCCBSS--CEEEEEEE T ss_pred HHHCCCCCEEEEE----CCCCCC--CEEEEEEC T ss_conf 8886779748996----776568--67999972 No 8 >3f1j_A Matrix protein, GP18, P16; viral matrix protein, RNA binding, membrane binding, viruses, ssRNA negative-strand viruses, mononegavirales; HET: C5P; 2.65A {Borna disease virus} Probab=9.77 E-value=1.1e+02 Score=13.62 Aligned_cols=15 Identities=40% Similarity=0.709 Sum_probs=11.9 Q ss_pred CCEEEEEEECCCEEE Q ss_conf 866999960786232 Q gi|254781069|r 17 YPLMIAIDYEGGEVS 31 (43) Q Consensus 17 yplmiaidyeggevs 31 (43) -.||..||+-||.-. T Consensus 20 ptlmleid~~ggt~~ 34 (142) T 3f1j_A 20 PTLMLEIDFVGGTSR 34 (142) T ss_dssp CEEEEEEECSSSSSC T ss_pred CEEEEEEECCCCCCC T ss_conf 627999870478545 No 9 >2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B* Probab=6.33 E-value=1.7e+02 Score=12.80 Aligned_cols=15 Identities=47% Similarity=0.614 Sum_probs=11.6 Q ss_pred CEEEEEEECCCEEEE Q ss_conf 669999607862323 Q gi|254781069|r 18 PLMIAIDYEGGEVSR 32 (43) Q Consensus 18 plmiaidyeggevsr 32 (43) -+-+-.|||.|++|= T Consensus 127 rIGV~LDye~G~lSF 141 (188) T 2vok_A 127 QIGIFVDYEAGVVSF 141 (188) T ss_dssp EEEEEEETTTTEEEE T ss_pred EEEEEEECCCCEEEE T ss_conf 899997737998999 No 10 >3f94_A Beta-glucosidase; (alpha/beta)8 barrel, (alpha/beta)6 sheet, hydrolase; 2.30A {Pseudoalteromonas SP} PDB: 3f93_A Probab=4.93 E-value=1.8e+02 Score=12.70 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=17.4 Q ss_pred CCCEEEEEEECCCEEEEEEEEEEE Q ss_conf 686699996078623233332201 Q gi|254781069|r 16 SYPLMIAIDYEGGEVSRLICTTVF 39 (43) Q Consensus 16 syplmiaidyeggevsrlicttvf 39 (43) ..|+++++|-++|-+.++-. |.| T Consensus 102 gIP~~~~~D~~~G~~~~~ga-T~f 124 (822) T 3f94_A 102 AIPTVWGTDAMHGHSNVYGA-TLF 124 (822) T ss_dssp CCCCCEEEECSSSSTTSTTC-CCC T ss_pred CCCCEEEEECCCCEECCCCC-CCC T ss_conf 88838998358862568898-868 Done!