Query         gi|254781069|ref|YP_003065482.1| hypothetical protein CLIBASIA_04855 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 43
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed Jun  1 00:03:12 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781069.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2oxn_A Beta-hexosaminidase; TI  92.7   0.024   1E-06   31.3   0.9   21   15-35     53-73  (340)
  2 3bmx_A Uncharacterized lipopro  71.9     1.3 5.3E-05   23.1   1.5   26   15-40    114-139 (642)
  3 1x38_A Beta-D-glucan exohydrol  20.1      21  0.0009   17.1   0.4   24   16-40     87-110 (602)
  4 3kb5_A Tripartite motif-contai  12.7      74  0.0031   14.5   1.6   14   19-32    136-149 (193)
  5 2wl1_A Pyrin, marenostrin; amy  12.6      75  0.0031   14.5   1.6   14   19-32    133-146 (191)
  6 2fbe_A Predicted: similar to R  10.4      98  0.0041   14.0   1.6   14   19-32    130-143 (201)
  7 1hq0_A CNF1, cytotoxic necroti   9.9 1.1E+02  0.0048   13.6   2.6   27   10-42    128-154 (295)
  8 3f1j_A Matrix protein, GP18, P   9.8 1.1E+02  0.0048   13.6   1.8   15   17-31     20-34  (142)
  9 2vok_A 52 kDa RO protein; poly   6.3 1.7E+02  0.0071   12.8   2.1   15   18-32    127-141 (188)
 10 3f94_A Beta-glucosidase; (alph   4.9 1.8E+02  0.0075   12.7   0.8   23   16-39    102-124 (822)

No 1  
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A
Probab=92.73  E-value=0.024  Score=31.33  Aligned_cols=21  Identities=38%  Similarity=0.719  Sum_probs=18.5

Q ss_pred             CCCCEEEEEEECCCEEEEEEE
Q ss_conf             268669999607862323333
Q gi|254781069|r   15 SSYPLMIAIDYEGGEVSRLIC   35 (43)
Q Consensus        15 ssyplmiaidyeggevsrlic   35 (43)
                      +..||+|+||-|||.|+|+.-
T Consensus        53 ~~~pllIaiDqEGG~v~rl~~   73 (340)
T 2oxn_A           53 AKRPILIGVDQEGGRVQRFRE   73 (340)
T ss_dssp             HSSCCEEEECEEETTEESCCT
T ss_pred             CCCCCEEEECCCCCEEEECCC
T ss_conf             199958998158972442268


No 2  
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycosidase, hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A*
Probab=71.95  E-value=1.3  Score=23.06  Aligned_cols=26  Identities=50%  Similarity=0.683  Sum_probs=21.6

Q ss_pred             CCCCEEEEEEECCCEEEEEEEEEEEE
Q ss_conf             26866999960786232333322012
Q gi|254781069|r   15 SSYPLMIAIDYEGGEVSRLICTTVFA   40 (43)
Q Consensus        15 ssyplmiaidyeggevsrlicttvfa   40 (43)
                      ...|++|++|.|||.+.|+--.|.|.
T Consensus       114 ~~iPll~~~D~e~G~~~rl~~~t~fP  139 (642)
T 3bmx_A          114 PKIPLMLSIDQEGGIVTRLGEGTNFP  139 (642)
T ss_dssp             SSSCCEEEECCCBTTBCCCSSSCCCC
T ss_pred             CCCCCEEEECCCCCEEECCCCCCCCC
T ss_conf             99795799805898312389987898


No 3  
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A*
Probab=20.13  E-value=21  Score=17.12  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=18.6

Q ss_pred             CCCEEEEEEECCCEEEEEEEEEEEE
Q ss_conf             6866999960786232333322012
Q gi|254781069|r   16 SYPLMIAIDYEGGEVSRLICTTVFA   40 (43)
Q Consensus        16 syplmiaidyeggevsrlicttvfa   40 (43)
                      ..|++|++|.|+|-+.|+- .|.|.
T Consensus        87 gIP~l~~~D~~~G~~~~~~-~t~fP  110 (602)
T 1x38_A           87 GIPMIYGIDAVHGQNNVYG-ATIFP  110 (602)
T ss_dssp             CCCCEEEECCSSSSTTSTT-CCCCC
T ss_pred             CCCCEEEEECCCCEECCCC-CCCCC
T ss_conf             9884798706876047889-87674


No 4  
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}
Probab=12.75  E-value=74  Score=14.54  Aligned_cols=14  Identities=14%  Similarity=0.313  Sum_probs=11.9

Q ss_pred             EEEEEEECCCEEEE
Q ss_conf             69999607862323
Q gi|254781069|r   19 LMIAIDYEGGEVSR   32 (43)
Q Consensus        19 lmiaidyeggevsr   32 (43)
                      +-|.+|||.|++|=
T Consensus       136 IGV~LDye~G~lsF  149 (193)
T 3kb5_A          136 IGLYLSFGDGVLSF  149 (193)
T ss_dssp             EEEEEETTTTEEEE
T ss_pred             EEEEEECCCCEEEE
T ss_conf             99997468998999


No 5  
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}
Probab=12.60  E-value=75  Score=14.51  Aligned_cols=14  Identities=36%  Similarity=0.515  Sum_probs=11.8

Q ss_pred             EEEEEEECCCEEEE
Q ss_conf             69999607862323
Q gi|254781069|r   19 LMIAIDYEGGEVSR   32 (43)
Q Consensus        19 lmiaidyeggevsr   32 (43)
                      +-|-.|||.|++|=
T Consensus       133 IGV~LD~e~G~lSF  146 (191)
T 2wl1_A          133 VGIFVDYRVGSISF  146 (191)
T ss_dssp             EEEEEETTTTEEEE
T ss_pred             EEEEEECCCCEEEE
T ss_conf             99988527998999


No 6  
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22
Probab=10.41  E-value=98  Score=13.95  Aligned_cols=14  Identities=14%  Similarity=0.057  Sum_probs=11.7

Q ss_pred             EEEEEEECCCEEEE
Q ss_conf             69999607862323
Q gi|254781069|r   19 LMIAIDYEGGEVSR   32 (43)
Q Consensus        19 lmiaidyeggevsr   32 (43)
                      +-|-.|||.|++|=
T Consensus       130 IGV~LDye~G~lSF  143 (201)
T 2fbe_A          130 VGIFLDVGMRSIAF  143 (201)
T ss_dssp             EEEEEETTTTEEEE
T ss_pred             EEEEEECCCCEEEE
T ss_conf             89998727998999


No 7  
>1hq0_A CNF1, cytotoxic necrotizing factor 1; beta sandwich, RHO deamidase, RHO transglutaminase, toxin; 1.83A {Escherichia coli} SCOP: d.194.1.1 PDB: 1hzg_A
Probab=9.90  E-value=1.1e+02  Score=13.63  Aligned_cols=27  Identities=33%  Similarity=0.663  Sum_probs=17.5

Q ss_pred             HHHHHCCCCEEEEEEECCCEEEEEEEEEEEEEE
Q ss_conf             321212686699996078623233332201230
Q gi|254781069|r   10 VNSVESSYPLMIAIDYEGGEVSRLICTTVFAIT   42 (43)
Q Consensus        10 vnsvessyplmiaidyeggevsrlicttvfait   42 (43)
                      .+.++..+|+.|.    +|..|-  ||+|+|+.
T Consensus       128 L~~I~~g~pvlit----sG~LSG--CT~v~A~K  154 (295)
T 1hq0_A          128 LEEVQEGKPVIIT----SGNLSG--CTTIVARK  154 (295)
T ss_dssp             GGGCBTTBCEEEE----CCCBSS--CEEEEEEE
T ss_pred             HHHCCCCCEEEEE----CCCCCC--CEEEEEEC
T ss_conf             8886779748996----776568--67999972


No 8  
>3f1j_A Matrix protein, GP18, P16; viral matrix protein, RNA binding, membrane binding, viruses, ssRNA negative-strand viruses, mononegavirales; HET: C5P; 2.65A {Borna disease virus}
Probab=9.77  E-value=1.1e+02  Score=13.62  Aligned_cols=15  Identities=40%  Similarity=0.709  Sum_probs=11.9

Q ss_pred             CCEEEEEEECCCEEE
Q ss_conf             866999960786232
Q gi|254781069|r   17 YPLMIAIDYEGGEVS   31 (43)
Q Consensus        17 yplmiaidyeggevs   31 (43)
                      -.||..||+-||.-.
T Consensus        20 ptlmleid~~ggt~~   34 (142)
T 3f1j_A           20 PTLMLEIDFVGGTSR   34 (142)
T ss_dssp             CEEEEEEECSSSSSC
T ss_pred             CEEEEEEECCCCCCC
T ss_conf             627999870478545


No 9  
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=6.33  E-value=1.7e+02  Score=12.80  Aligned_cols=15  Identities=47%  Similarity=0.614  Sum_probs=11.6

Q ss_pred             CEEEEEEECCCEEEE
Q ss_conf             669999607862323
Q gi|254781069|r   18 PLMIAIDYEGGEVSR   32 (43)
Q Consensus        18 plmiaidyeggevsr   32 (43)
                      -+-+-.|||.|++|=
T Consensus       127 rIGV~LDye~G~lSF  141 (188)
T 2vok_A          127 QIGIFVDYEAGVVSF  141 (188)
T ss_dssp             EEEEEEETTTTEEEE
T ss_pred             EEEEEEECCCCEEEE
T ss_conf             899997737998999


No 10 
>3f94_A Beta-glucosidase; (alpha/beta)8 barrel, (alpha/beta)6 sheet, hydrolase; 2.30A {Pseudoalteromonas SP} PDB: 3f93_A
Probab=4.93  E-value=1.8e+02  Score=12.70  Aligned_cols=23  Identities=22%  Similarity=0.258  Sum_probs=17.4

Q ss_pred             CCCEEEEEEECCCEEEEEEEEEEE
Q ss_conf             686699996078623233332201
Q gi|254781069|r   16 SYPLMIAIDYEGGEVSRLICTTVF   39 (43)
Q Consensus        16 syplmiaidyeggevsrlicttvf   39 (43)
                      ..|+++++|-++|-+.++-. |.|
T Consensus       102 gIP~~~~~D~~~G~~~~~ga-T~f  124 (822)
T 3f94_A          102 AIPTVWGTDAMHGHSNVYGA-TLF  124 (822)
T ss_dssp             CCCCCEEEECSSSSTTSTTC-CCC
T ss_pred             CCCCEEEEECCCCEECCCCC-CCC
T ss_conf             88838998358862568898-868


Done!