RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781069|ref|YP_003065482.1| hypothetical protein
CLIBASIA_04855 [Candidatus Liberibacter asiaticus str. psy62]
         (43 letters)



>gnl|CDD|31661 COG1472, BglX, Beta-glucosidase-related glycosidases
          [Carbohydrate transport and metabolism].
          Length = 397

 Score = 26.1 bits (57), Expect = 2.2
 Identities = 12/16 (75%), Positives = 13/16 (81%)

Query: 18 PLMIAIDYEGGEVSRL 33
          PL+IAID EGG V RL
Sbjct: 61 PLLIAIDQEGGRVQRL 76


>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA
           synthetase.  Tyrosinyl-tRNA synthetase (TyrRS) catalytic
           core domain. TyrRS is a homodimer which attaches Tyr to
           the appropriate tRNA. TyrRS is a class I tRNA
           synthetases, so it aminoacylates the 2'-OH of the
           nucleotide at the 3' end of the tRNA. The core domain is
           based on the Rossman fold and is responsible for the
           ATP-dependent formationof the enzyme bound
           aminoacyl-adenylate. It contains the class I
           characteristic HIGH and KMSKS motifs, which are involved
           in ATP binding.
          Length = 269

 Score = 24.1 bits (53), Expect = 9.0
 Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 6/32 (18%)

Query: 1   MAKEADKQKVNSVES------SYPLMIAIDYE 26
           + ++A K ++   E        YPL+ A D+ 
Sbjct: 117 LRRDAVKVRLEEEEGISFSEFIYPLLQAYDFV 148


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.314    0.127    0.339 

Gapped
Lambda     K      H
   0.267   0.0548    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 414,399
Number of extensions: 10237
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 2
Length of query: 43
Length of database: 6,263,737
Length adjustment: 17
Effective length of query: 26
Effective length of database: 5,896,384
Effective search space: 153305984
Effective search space used: 153305984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.8 bits)