RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781069|ref|YP_003065482.1| hypothetical protein CLIBASIA_04855 [Candidatus Liberibacter asiaticus str. psy62] (43 letters) >3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycosidase, hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* Length = 642 Score = 33.7 bits (76), Expect = 0.011 Identities = 13/23 (56%), Positives = 16/23 (69%) Query: 17 YPLMIAIDYEGGEVSRLICTTVF 39 PLM++ID EGG V+RL T F Sbjct: 116 IPLMLSIDQEGGIVTRLGEGTNF 138 >2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A Length = 340 Score = 30.7 bits (68), Expect = 0.083 Identities = 8/21 (38%), Positives = 12/21 (57%) Query: 15 SSYPLMIAIDYEGGEVSRLIC 35 + P++I +D EGG V R Sbjct: 53 AKRPILIGVDQEGGRVQRFRE 73 >1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Length = 602 Score = 26.9 bits (58), Expect = 1.3 Identities = 5/19 (26%), Positives = 9/19 (47%) Query: 18 PLMIAIDYEGGEVSRLICT 36 P++ ID G+ + T Sbjct: 89 PMIYGIDAVHGQNNVYGAT 107 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 25.3 bits (54), Expect = 3.2 Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 9/26 (34%) Query: 6 DKQKVNSVESS---Y-----PLMIAI 23 +KQ + +++S Y P +AI Sbjct: 18 EKQALKKLQASLKLYADDSAP-ALAI 42 >3f94_A Beta-glucosidase; (alpha/beta)8 barrel, (alpha/beta)6 sheet, hydrolase; 2.30A {Pseudoalteromonas SP} PDB: 3f93_A Length = 822 Score = 24.6 bits (52), Expect = 6.0 Identities = 4/19 (21%), Positives = 6/19 (31%) Query: 18 PLMIAIDYEGGEVSRLICT 36 P + D G + T Sbjct: 104 PTVWGTDAMHGHSNVYGAT 122 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.314 0.127 0.339 Gapped Lambda K H 0.267 0.0426 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 293,048 Number of extensions: 6539 Number of successful extensions: 20 Number of sequences better than 10.0: 1 Number of HSP's gapped: 20 Number of HSP's successfully gapped: 5 Length of query: 43 Length of database: 5,693,230 Length adjustment: 16 Effective length of query: 27 Effective length of database: 5,305,326 Effective search space: 143243802 Effective search space used: 143243802 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 50 (23.8 bits)