RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781069|ref|YP_003065482.1| hypothetical protein
CLIBASIA_04855 [Candidatus Liberibacter asiaticus str. psy62]
         (43 letters)



>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM
           barrel, glycosidase, hydrolase, membrane, palmitate;
           HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A*
          Length = 642

 Score = 33.7 bits (76), Expect = 0.011
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 17  YPLMIAIDYEGGEVSRLICTTVF 39
            PLM++ID EGG V+RL   T F
Sbjct: 116 IPLMLSIDQEGGIVTRLGEGTNF 138


>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A
          {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A
          Length = 340

 Score = 30.7 bits (68), Expect = 0.083
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 15 SSYPLMIAIDYEGGEVSRLIC 35
          +  P++I +D EGG V R   
Sbjct: 53 AKRPILIGVDQEGGRVQRFRE 73


>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold,
           ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL;
           1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB:
           1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A*
           1j8v_A*
          Length = 602

 Score = 26.9 bits (58), Expect = 1.3
 Identities = 5/19 (26%), Positives = 9/19 (47%)

Query: 18  PLMIAIDYEGGEVSRLICT 36
           P++  ID   G+ +    T
Sbjct: 89  PMIYGIDAVHGQNNVYGAT 107


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 25.3 bits (54), Expect = 3.2
 Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 9/26 (34%)

Query: 6  DKQKVNSVESS---Y-----PLMIAI 23
          +KQ +  +++S   Y     P  +AI
Sbjct: 18 EKQALKKLQASLKLYADDSAP-ALAI 42


>3f94_A Beta-glucosidase; (alpha/beta)8 barrel, (alpha/beta)6 sheet,
           hydrolase; 2.30A {Pseudoalteromonas SP} PDB: 3f93_A
          Length = 822

 Score = 24.6 bits (52), Expect = 6.0
 Identities = 4/19 (21%), Positives = 6/19 (31%)

Query: 18  PLMIAIDYEGGEVSRLICT 36
           P +   D   G  +    T
Sbjct: 104 PTVWGTDAMHGHSNVYGAT 122


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.314    0.127    0.339 

Gapped
Lambda     K      H
   0.267   0.0426    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 293,048
Number of extensions: 6539
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 5
Length of query: 43
Length of database: 5,693,230
Length adjustment: 16
Effective length of query: 27
Effective length of database: 5,305,326
Effective search space: 143243802
Effective search space used: 143243802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.8 bits)