Query gi|254781070|ref|YP_003065483.1| hypothetical protein CLIBASIA_04860 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 58
No_of_seqs 111 out of 1149
Neff 5.7
Searched_HMMs 39220
Date Mon May 30 03:53:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781070.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05337 beta-hexosaminidase; 99.6 2.2E-16 5.5E-21 114.8 5.0 53 1-56 106-158 (336)
2 COG1472 BglX Beta-glucosidase- 99.6 2E-15 5.1E-20 109.3 5.0 55 1-56 105-159 (397)
3 pfam00933 Glyco_hydro_3 Glycos 99.5 1E-14 2.7E-19 105.2 4.7 54 1-56 54-107 (225)
4 PRK03355 glycerol-3-phosphate 73.5 1.2 3E-05 25.5 0.5 32 7-40 293-324 (774)
5 COG2937 PlsB Glycerol-3-phosph 72.8 1.2 3.1E-05 25.4 0.5 33 6-40 327-359 (810)
6 PRK11915 glycerol-3-phosphate 70.0 1.6 4E-05 24.8 0.5 33 6-40 146-178 (621)
7 PRK04974 glycerol-3-phosphate 64.9 2.4 6E-05 23.8 0.6 33 6-40 332-364 (815)
8 TIGR02815 agaS_fam putative su 46.5 21 0.00054 18.3 3.0 42 5-47 67-116 (374)
9 pfam05392 COX7B Cytochrome C o 46.2 6.3 0.00016 21.3 0.2 18 4-21 56-73 (80)
10 cd01403 Cyt_c_Oxidase_VIIb Cyt 44.4 6.1 0.00015 21.4 -0.1 18 4-21 28-45 (51)
11 TIGR00695 uxuA mannonate dehyd 40.9 12 0.0003 19.8 0.9 19 3-21 92-113 (396)
12 PRK03705 glycogen debranching 37.1 43 0.0011 16.6 3.9 53 3-56 186-254 (658)
13 pfam09345 DUF1987 Domain of un 35.4 45 0.0012 16.5 4.1 42 16-58 1-42 (99)
14 cd06412 GH25_CH-type CH-type ( 28.1 61 0.0015 15.8 4.7 40 12-56 87-126 (199)
15 pfam01294 Ribosomal_L13e Ribos 26.3 41 0.001 16.7 1.7 23 3-25 73-95 (179)
16 COG2344 AT-rich DNA-binding pr 25.2 39 0.00098 16.9 1.4 27 2-30 163-191 (211)
17 pfam03255 ACCA Acetyl co-enzym 22.3 23 0.00059 18.1 -0.2 15 32-46 86-100 (145)
18 TIGR02564 cas_Csy1 CRISPR-asso 22.3 60 0.0015 15.8 2.0 22 33-54 102-123 (413)
19 PRK05472 redox-sensing transcr 21.4 38 0.00097 16.9 0.8 27 2-30 163-191 (211)
20 PTZ00192 60S ribosomal protein 21.1 58 0.0015 15.9 1.7 23 3-25 83-105 (218)
No 1
>PRK05337 beta-hexosaminidase; Provisional
Probab=99.64 E-value=2.2e-16 Score=114.78 Aligned_cols=53 Identities=30% Similarity=0.389 Sum_probs=48.2
Q ss_pred CHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 96899961896122114500468878714136775888899999999999999867
Q gi|254781070|r 1 MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKN 56 (58)
Q Consensus 1 iA~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n 56 (58)
||.||+++|||+|||||+||+ ..+++++ +||||+||+.|++++.+|++|++++
T Consensus 106 ~a~eL~a~Gin~nfAPVlDl~--~~~~vIg-~RsFg~dp~~V~~la~a~i~G~~~~ 158 (336)
T PRK05337 106 MAAELRACGIDLSFAPVLDLD--GISAVIG-DRAFHRDPQVVAALASAFIDGMHAA 158 (336)
T ss_pred HHHHHHHCCCCCCCCCCCCCC--CCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 999999809884406550478--9986657-8888899999999999999988856
No 2
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=99.57 E-value=2e-15 Score=109.30 Aligned_cols=55 Identities=29% Similarity=0.349 Sum_probs=52.3
Q ss_pred CHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 96899961896122114500468878714136775888899999999999999867
Q gi|254781070|r 1 MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKN 56 (58)
Q Consensus 1 iA~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n 56 (58)
||+||+++||||+||||+||.++|++.+++ +||||+||+.|+.++.+|++|+|.+
T Consensus 105 ~A~Elra~Gin~~fAPvlDv~~~p~~~ri~-ersfgeDP~lv~~l~~a~i~Glq~~ 159 (397)
T COG1472 105 IAKELRALGINLDFAPVLDVARDPRWGRIG-ERSFGEDPELVALLAAAFIKGLQGA 159 (397)
T ss_pred HHHHHHHCCCCCCCCCEECCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 999999839885411324157687666655-6566789899999999999764006
No 3
>pfam00933 Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain.
Probab=99.52 E-value=1e-14 Score=105.21 Aligned_cols=54 Identities=24% Similarity=0.247 Sum_probs=49.5
Q ss_pred CHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 96899961896122114500468878714136775888899999999999999867
Q gi|254781070|r 1 MAKNLVTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKN 56 (58)
Q Consensus 1 iA~~L~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n 56 (58)
+|+||+++|||||||||+|+..+++..++ +||||+||+.|++++.+|++|+|++
T Consensus 54 ~a~el~~~Gin~~~aPv~Dv~~~~~~~r~--~rsfgeDp~~v~~~~~a~v~G~q~~ 107 (225)
T pfam00933 54 IGEEARAKGIDVILAPVVDLGRDPRWGRN--FESFSEDPYLAGAMAAAYIKGIQSQ 107 (225)
T ss_pred HHHHHHHCCCCEEECCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99999980998761465257778876512--1344788889999999999987251
No 4
>PRK03355 glycerol-3-phosphate acyltransferase; Validated
Probab=73.50 E-value=1.2 Score=25.48 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=27.5
Q ss_pred HCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHH
Q ss_conf 6189612211450046887871413677588889
Q gi|254781070|r 7 TSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPA 40 (58)
Q Consensus 7 ~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~ 40 (58)
..|+|+||-|+=-+........+. |||++|+-
T Consensus 293 ~aG~NLn~~~~G~~~rr~Ga~FIR--Rsf~~~~l 324 (774)
T PRK03355 293 FGGINLSFGPMGPLMRRSGMIFIR--RNIGDDPL 324 (774)
T ss_pred EECCCCCCCCCHHHHHCCCEEEEE--ECCCCCHH
T ss_conf 521554872307998527607997--12688678
No 5
>COG2937 PlsB Glycerol-3-phosphate O-acyltransferase [Lipid metabolism]
Probab=72.76 E-value=1.2 Score=25.40 Aligned_cols=33 Identities=27% Similarity=0.510 Sum_probs=27.8
Q ss_pred HHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHH
Q ss_conf 96189612211450046887871413677588889
Q gi|254781070|r 6 VTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPA 40 (58)
Q Consensus 6 ~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~ 40 (58)
-..|||+||-|+=-+..-...+.|+ |+|+.+|=
T Consensus 327 iaAGINLNf~p~G~i~RR~GAfFIR--RsfKgn~L 359 (810)
T COG2937 327 IAAGINLNFWPMGPIFRRGGAFFIR--RTFKGNPL 359 (810)
T ss_pred HHCCCCCCCCCCHHHHHHCCCEEEE--ECCCCCHH
T ss_conf 4200232675325888735606987--31589716
No 6
>PRK11915 glycerol-3-phosphate acyltransferase; Reviewed
Probab=69.99 E-value=1.6 Score=24.77 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=27.4
Q ss_pred HHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHH
Q ss_conf 96189612211450046887871413677588889
Q gi|254781070|r 6 VTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPA 40 (58)
Q Consensus 6 ~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~ 40 (58)
-..|+|+||-|+=-+......+.++ |||++|+-
T Consensus 146 i~aG~NLnf~~~G~ilRr~GAfFIR--RsF~~d~L 178 (621)
T PRK11915 146 TFGGANLNFFPMGAWAKRTGAIFIR--RQTKDIPV 178 (621)
T ss_pred CCCCCCCCCCCHHHHHHCCCCEEEE--ECCCCCHH
T ss_conf 2204566760107998627717997--22698678
No 7
>PRK04974 glycerol-3-phosphate acyltransferase; Validated
Probab=64.92 E-value=2.4 Score=23.76 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=28.0
Q ss_pred HHCCCCCCCCEEEEECCCCCCCEECCCCCCCCCHH
Q ss_conf 96189612211450046887871413677588889
Q gi|254781070|r 6 VTSGINVNFSPVLDLLYGPETFIAQKRSIFSRIPA 40 (58)
Q Consensus 6 ~~~Gin~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~ 40 (58)
-+.|+|+||-|+=-+........++ |||..|+-
T Consensus 332 iaAG~nln~~~~G~ilR~~GafF~R--Rsf~~n~l 364 (815)
T PRK04974 332 IAAGINLNFWPAGPIFRRGGAFFIR--RSFKGNKL 364 (815)
T ss_pred HHCCCCCCCCCCHHHHHCCCEEEEE--CCCCCCHH
T ss_conf 0003566885427888516427886--12378736
No 8
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family; InterPro: IPR014180 Some members of this protein family are found in genic regions associated with N-acetyl-galactosamine and galactosamine utilisation and are suggested to be isomerases..
Probab=46.46 E-value=21 Score=18.34 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=32.6
Q ss_pred HHHCCCCCCCCEEEEECCCCC------C--CEECCCCCCCCCHHHHHHHHH
Q ss_conf 996189612211450046887------8--714136775888899999999
Q gi|254781070|r 5 LVTSGINVNFSPVLDLLYGPE------T--FIAQKRSIFSRIPAKAEESAQ 47 (58)
Q Consensus 5 L~~~Gin~n~aPVlDi~~~~~------~--~i~~~~Rsfg~dp~~V~~~a~ 47 (58)
-+.+|.|+.=-|-.||-.||. . -.+++.|| |+.||-|+.-.-
T Consensus 67 ~~~~G~~V~A~pTTDLV~nP~qyL~p~~PTLLvSfaRS-GNSPESVAAV~L 116 (374)
T TIGR02815 67 AKHLGLRVEAVPTTDLVSNPAQYLDPDRPTLLVSFARS-GNSPESVAAVEL 116 (374)
T ss_pred HHHCCCCEEEEECCCCCCCHHHHCCCCCCHHEEEECCC-CCCHHHHHHHHH
T ss_conf 98409815885237777881551464554120221125-887657999988
No 9
>pfam05392 COX7B Cytochrome C oxidase chain VIIB.
Probab=46.20 E-value=6.3 Score=21.34 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=14.4
Q ss_pred HHHHCCCCCCCCEEEEEC
Q ss_conf 999618961221145004
Q gi|254781070|r 4 NLVTSGINVNFSPVLDLL 21 (58)
Q Consensus 4 ~L~~~Gin~n~aPVlDi~ 21 (58)
.+-.+||.|||+||=-|.
T Consensus 56 v~TQ~GIeWnlSPVGrVt 73 (80)
T pfam05392 56 VATQIGIEWNLSPVGRVT 73 (80)
T ss_pred HHEECCEEECCCCCCCCC
T ss_conf 630000024467655557
No 10
>cd01403 Cyt_c_Oxidase_VIIb Cytochrome C oxidase chain VIIb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIIb subunit is found only in eukaryotes and its specific function remains unclear. A rare polymorphism of the CcO VIIb gene may be associated with the high risk of nasopharyngeal carcinoma in a Cantonese family.
Probab=44.39 E-value=6.1 Score=21.43 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=14.0
Q ss_pred HHHHCCCCCCCCEEEEEC
Q ss_conf 999618961221145004
Q gi|254781070|r 4 NLVTSGINVNFSPVLDLL 21 (58)
Q Consensus 4 ~L~~~Gin~n~aPVlDi~ 21 (58)
.+-++||.|||+||=-|.
T Consensus 28 v~TQ~gI~WnlSPVGrVt 45 (51)
T cd01403 28 VMTQTGIEWNLSPVGRVT 45 (51)
T ss_pred EEEEEEEEECCCCCCCCC
T ss_conf 035311236366544336
No 11
>TIGR00695 uxuA mannonate dehydratase; InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process.
Probab=40.86 E-value=12 Score=19.82 Aligned_cols=19 Identities=53% Similarity=0.863 Sum_probs=15.1
Q ss_pred HHHHHCCCCC---CCCEEEEEC
Q ss_conf 8999618961---221145004
Q gi|254781070|r 3 KNLVTSGINV---NFSPVLDLL 21 (58)
Q Consensus 3 ~~L~~~Gin~---n~aPVlDi~ 21 (58)
+.|+.+||.+ ||.||+|=.
T Consensus 92 RNLA~~Gi~~vCYNFMPVlDWT 113 (396)
T TIGR00695 92 RNLAQCGIKTVCYNFMPVLDWT 113 (396)
T ss_pred HHHHHCCCEEEEECCCCCCCCC
T ss_conf 9886288317873366565522
No 12
>PRK03705 glycogen debranching enzyme; Provisional
Probab=37.12 E-value=43 Score=16.63 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=35.5
Q ss_pred HHHHHCCCC-CCCCEEEEEC---------------CCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 899961896-1221145004---------------68878714136775888899999999999999867
Q gi|254781070|r 3 KNLVTSGIN-VNFSPVLDLL---------------YGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKN 56 (58)
Q Consensus 3 ~~L~~~Gin-~n~aPVlDi~---------------~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n 56 (58)
.-|+.+||+ +-|-||-|-. ++|-+...- +.+|+++|..-++==+.++++++++
T Consensus 186 ~yLk~LGVT~VeLLPV~~f~~e~~~~~~gl~NyWGYdp~~yfaP-e~~Yas~p~~~~~Efk~mV~~lH~~ 254 (658)
T PRK03705 186 AYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFAL-HPAYASSPETALDEFRDAVKALHKA 254 (658)
T ss_pred HHHHHCCCCEEEEECCEECCCCCCHHHCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99998098779998986667785021037767767664325678-6534799861889999999999987
No 13
>pfam09345 DUF1987 Domain of unknown function (DUF1987). This family of proteins are functionally uncharacterized.
Probab=35.40 E-value=45 Score=16.47 Aligned_cols=42 Identities=10% Similarity=0.122 Sum_probs=30.1
Q ss_pred EEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 1450046887871413677588889999999999999986789
Q gi|254781070|r 16 PVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKNPK 58 (58)
Q Consensus 16 PVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n~~ 58 (58)
|-++.+....-.-+. ++||..|+..--+-...+++.+.+.|+
T Consensus 1 P~V~fd~~~g~l~i~-GeSypE~~~~Fy~Pi~~wl~~Yl~~~~ 42 (99)
T pfam09345 1 PEVSFDAETGVLEIS-GESYPENAFEFYEPILDWLEAYLAQPN 42 (99)
T ss_pred CEEEEECCCCEEEEE-EEECCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 968885679989998-555067879999999999999981789
No 14
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=28.12 E-value=61 Score=15.76 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=31.0
Q ss_pred CCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 122114500468878714136775888899999999999999867
Q gi|254781070|r 12 VNFSPVLDLLYGPETFIAQKRSIFSRIPAKAEESAQLFSRTYIKN 56 (58)
Q Consensus 12 ~n~aPVlDi~~~~~~~i~~~~Rsfg~dp~~V~~~a~afi~~~~~n 56 (58)
..+-||+|+-.++. + .+++|.+++.+.....+|++..++.
T Consensus 87 ~~lp~~lD~E~~~~----~-~~~~~~s~~~~~~~~~~f~~~v~~~ 126 (199)
T cd06412 87 RTLPGVLDLEYNPY----G-ATCYGLSPAQMVSWIKDFSDTYKAR 126 (199)
T ss_pred CCCCEEEEEEECCC----C-CCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 76883999970798----8-7666799999999999999999986
No 15
>pfam01294 Ribosomal_L13e Ribosomal protein L13e.
Probab=26.31 E-value=41 Score=16.75 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.5
Q ss_pred HHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 89996189612211450046887
Q gi|254781070|r 3 KNLVTSGINVNFSPVLDLLYGPE 25 (58)
Q Consensus 3 ~~L~~~Gin~n~aPVlDi~~~~~ 25 (58)
+||++.||+-.+|+-+-|..+.+
T Consensus 73 eELkaAGi~~k~A~tIGIaVD~R 95 (179)
T pfam01294 73 EELKAAGINKKFARTIGIAVDHR 95 (179)
T ss_pred HHHHHCCCCHHHCCEEEEEECCC
T ss_conf 99998499853445202662655
No 16
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=25.22 E-value=39 Score=16.87 Aligned_cols=27 Identities=44% Similarity=0.771 Sum_probs=17.5
Q ss_pred HHHHHHCCCC--CCCCEEEEECCCCCCCEEC
Q ss_conf 6899961896--1221145004688787141
Q gi|254781070|r 2 AKNLVTSGIN--VNFSPVLDLLYGPETFIAQ 30 (58)
Q Consensus 2 A~~L~~~Gin--~n~aPVlDi~~~~~~~i~~ 30 (58)
|..|-..||. |||+||- +.. |+.++..
T Consensus 163 ad~Lv~aGVkGIlNFtPv~-l~~-pe~V~V~ 191 (211)
T COG2344 163 ADRLVKAGVKGILNFTPVR-LQV-PEGVIVE 191 (211)
T ss_pred HHHHHHCCCCEEEECCCEE-ECC-CCCCEEE
T ss_conf 9999983873588426357-518-9873799
No 17
>pfam03255 ACCA Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit. Acetyl co-enzyme A carboxylase carboxyltransferase is composed of an alpha and beta subunit.
Probab=22.35 E-value=23 Score=18.14 Aligned_cols=15 Identities=13% Similarity=-0.102 Sum_probs=12.4
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 677588889999999
Q gi|254781070|r 32 RSIFSRIPAKAEESA 46 (58)
Q Consensus 32 ~Rsfg~dp~~V~~~a 46 (58)
||.||+||++|.-.|
T Consensus 86 DR~f~DD~AIigG~a 100 (145)
T pfam03255 86 DRAGADDPAIVGGLG 100 (145)
T ss_pred CCCCCCCCCCEEEEE
T ss_conf 856666974057788
No 18
>TIGR02564 cas_Csy1 CRISPR-associated protein, Csy1 family; InterPro: IPR013397 CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1..
Probab=22.28 E-value=60 Score=15.76 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=20.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7758888999999999999998
Q gi|254781070|r 33 SIFSRIPAKAEESAQLFSRTYI 54 (58)
Q Consensus 33 Rsfg~dp~~V~~~a~afi~~~~ 54 (58)
++|++|+|.+.++-..|..-+.
T Consensus 102 ~~fadD~El~~~w~~~F~~~l~ 123 (413)
T TIGR02564 102 KAFADDPELSEQWKTKFQAVLT 123 (413)
T ss_pred HHHCCCHHHHHHHHHHHHHHHC
T ss_conf 9715898899999998888736
No 19
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=21.39 E-value=38 Score=16.90 Aligned_cols=27 Identities=52% Similarity=0.784 Sum_probs=18.0
Q ss_pred HHHHHHCCCC--CCCCEEEEECCCCCCCEEC
Q ss_conf 6899961896--1221145004688787141
Q gi|254781070|r 2 AKNLVTSGIN--VNFSPVLDLLYGPETFIAQ 30 (58)
Q Consensus 2 A~~L~~~Gin--~n~aPVlDi~~~~~~~i~~ 30 (58)
|.+|-+.||. |||||+. +.. |.+.+..
T Consensus 163 ad~Lv~aGIk~IlNFap~~-L~v-P~~V~V~ 191 (211)
T PRK05472 163 ADRLVEAGIKGILNFAPVR-LNV-PEDVIVQ 191 (211)
T ss_pred HHHHHHHCCEEEEECCCCC-CCC-CCCCEEE
T ss_conf 9999981983999768724-479-9997899
No 20
>PTZ00192 60S ribosomal protein L13; Provisional
Probab=21.09 E-value=58 Score=15.87 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=20.5
Q ss_pred HHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 89996189612211450046887
Q gi|254781070|r 3 KNLVTSGINVNFSPVLDLLYGPE 25 (58)
Q Consensus 3 ~~L~~~Gin~n~aPVlDi~~~~~ 25 (58)
+||++.||+-.+|+.+-|..+++
T Consensus 83 eELk~AGi~~k~A~tIGIaVD~R 105 (218)
T PTZ00192 83 AELKAAGLNPRYAATIGIRVDRR 105 (218)
T ss_pred HHHHHCCCCHHHCCEEEEEECCC
T ss_conf 99997599853435210661534
Done!