BLAST/PSIBLAST alignment of GI: 254781070 and GI: 54297148 at iteration 2
>gi|54297148|ref|YP_123517.1| hypothetical protein lpp1193 [Legionella pneumophila str. Paris] Length = 382
>gi|53750933|emb|CAH12344.1| hypothetical protein lpp1193 [Legionella pneumophila str. Paris] Length = 382
 Score = 49.4 bits (116), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MAKNLVTSGINVNFSPVLDLLYGPET-FIAQKRSIFSRIPAKAEESAQLFSRTYIKN 56
           MA  L ++G N+NF P LD+   P+   I +K   FS IP    + AQL++  +IK+
Sbjct: 156 MANTLKSTGFNLNFFPELDVNINPDNPIIGKKDRSFSSIPEIVTQYAQLYTEQFIKH 212