RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781071|ref|YP_003065484.1| hypothetical protein
CLIBASIA_04865 [Candidatus Liberibacter asiaticus str. psy62]
(71 letters)
>gnl|CDD|169276 PRK08201, PRK08201, hypothetical protein; Provisional.
Length = 456
Score = 25.9 bits (57), Expect = 2.3
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 31 QQDPADVIELIYAHVKS 47
QDP ++++LI AH+++
Sbjct: 333 DQDPQEILDLIEAHLQA 349
>gnl|CDD|170049 PRK09692, PRK09692, integrase; Provisional.
Length = 413
Score = 25.4 bits (55), Expect = 3.1
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 30 DQQDPADVIELIYAHVKSGEIKPSRIESAYQRIIYLKNK 68
+Q P DVIE AHV E++ AY R YL+ +
Sbjct: 349 EQGFPPDVIEAALAHVDKNEVR-----RAYNRSDYLEQR 382
>gnl|CDD|162681 TIGR02068, cya_phycin_syn, cyanophycin synthetase. Cyanophycin
synthesis is analogous to polyhydroxyalkanoic acid (PHA)
biosynthesis, except that PHA polymers lack nitrogen and
may be made under nitrogen-limiting conditions.
Length = 864
Score = 25.5 bits (56), Expect = 3.2
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 4 AFKALLALIACKWNLSRIIAVYNAGADQQDPADVIEL 40
A +A+ A I W R I V D++D D++E
Sbjct: 743 AIEAVGAAIR-NWPARRRIGVIGGPGDRRD-EDLVEQ 777
>gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated.
Length = 238
Score = 25.2 bits (56), Expect = 4.0
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 27 AGADQQDPADVIELIYAHVKSGE 49
A + PADV I +++G+
Sbjct: 187 LDAPKASPADVARQILDALEAGD 209
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
Length = 612
Score = 25.1 bits (55), Expect = 4.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 21 IIAVYNAGADQQDPADVIELIYAHV 45
I+A AG + DPA I+ I A V
Sbjct: 544 IVAERAAGTSRADPAPAIDAIRAAV 568
>gnl|CDD|128484 smart00187, INB, Integrin beta subunits (N-terminal portion of
extracellular region). Portion of beta integrins that
lies N-terminal to their EGF-like repeats. Integrins are
cell adhesion molecules that mediate cell-extracellular
matrix and cell-cell interactions. They contain both
alpha and beta subunits. Beta integrins are proposed to
have a von Willebrand factor type-A "insert" or "I"
-like domain (although this remains to be confirmed).
Length = 423
Score = 24.6 bits (54), Expect = 5.5
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 14/48 (29%)
Query: 16 WNLSRIIAVYNAGADQQDPADVIELIYAHVKSGEIKPSRIESAYQRII 63
LS +I + G +D ++V+EL I+ AY +I
Sbjct: 306 KELSALIPGSSVGVLSEDSSNVVEL--------------IKDAYNKIS 339
>gnl|CDD|150028 pfam09205, DUF1955, Domain of unknown function (DUF1955). Members
of this family are found in hypothetical proteins
synthesized by the Archaeal organism Sulfolobus. Their
exact function has not, as yet, been determined.
Length = 160
Score = 24.8 bits (54), Expect = 5.7
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 31 QQDPADVIELIYAHVKSGEIKPS---RIESAYQRI 62
QQ D ++ I A + + EI P +I +AY++I
Sbjct: 98 QQGKKDQLDKILAELFNEEIPPEILLKIANAYKKI 132
>gnl|CDD|185619 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 24.4 bits (53), Expect = 5.9
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 36 DVIELIYAHVKSGEIKPSRIESAYQRIIYLKNKMKT 71
D+IELI +K K IE + I L KMKT
Sbjct: 1024 DIIELIDKLIKE---KGKEIEEKVDQYISLLEKMKT 1056
>gnl|CDD|152545 pfam12110, Nup96, Nuclear protein 96. Nup96 (often known by the
name of its yeast homolog Nup145C) is part of the Nup84
heptameric complex in the nuclear pore complex. Nup96
complexes with Sec13 in the middle of the heptamer. The
function of the heptamer is to coat the curvature of the
nuclear pore complex between the inner and outer nuclear
membranes. Nup96 is predicted to be an alpha helical
solenoid. The interaction between Nup96 and Sec13 is the
point of curvature in the heptameric complex.
Length = 287
Score = 24.2 bits (53), Expect = 7.8
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 15 KWNLSRIIAVYNAGADQQDPADVIELIYA 43
W+L ++++ D D AD + L +A
Sbjct: 185 SWHLCQVLSAVGYRHDSDDIADQLTLSFA 213
>gnl|CDD|129003 smart00764, Citrate_ly_lig, Citrate lyase ligase C-terminal domain.
Proteins of this family contain the C-terminal domain
of citrate lyase ligase EC:6.2.1.22.
Length = 182
Score = 24.1 bits (53), Expect = 8.5
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 18 LSRIIAVYNAGADQQDPADVIELI 41
S + A+YN Q + IE++
Sbjct: 118 FSPVTAIYNQTMKQTLLSPAIEVV 141
>gnl|CDD|178309 PLN02707, PLN02707, Soluble inorganic pyrophosphatase.
Length = 267
Score = 23.9 bits (52), Expect = 9.6
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 33 DPADVIELIYAHVKSGEIKP 52
DP DV+E+ K GE+
Sbjct: 142 DPVDVVEIGERAAKIGEVLK 161
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.134 0.400
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,148,500
Number of extensions: 56426
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 24
Length of query: 71
Length of database: 5,994,473
Length adjustment: 42
Effective length of query: 29
Effective length of database: 5,086,937
Effective search space: 147521173
Effective search space used: 147521173
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.0 bits)