BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781071|ref|YP_003065484.1| hypothetical protein
CLIBASIA_04865 [Candidatus Liberibacter asiaticus str. psy62]
         (71 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781071|ref|YP_003065484.1| hypothetical protein CLIBASIA_04865 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 71

 Score =  146 bits (369), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 71/71 (100%), Positives = 71/71 (100%)

Query: 1  MRWAFKALLALIACKWNLSRIIAVYNAGADQQDPADVIELIYAHVKSGEIKPSRIESAYQ 60
          MRWAFKALLALIACKWNLSRIIAVYNAGADQQDPADVIELIYAHVKSGEIKPSRIESAYQ
Sbjct: 1  MRWAFKALLALIACKWNLSRIIAVYNAGADQQDPADVIELIYAHVKSGEIKPSRIESAYQ 60

Query: 61 RIIYLKNKMKT 71
          RIIYLKNKMKT
Sbjct: 61 RIIYLKNKMKT 71


>gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 471

 Score = 21.6 bits (44), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 25  YNAGADQQDPADVIELIYAHVKSGEIKPSRIESA 58
           ++ G  + D  DV+  IYA    G   PSR + A
Sbjct: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA 155


>gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 762

 Score = 20.0 bits (40), Expect = 8.5,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 8   LLALIACKWNLSRIIAVYNAGADQQDPADVIELIY 42
           L A  + KWN+   +  ++ G   Q+    +++IY
Sbjct: 697 LSADASLKWNMRAELPSHSIGLAYQNDCATVKIIY 731


>gi|254780378|ref|YP_003064791.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 262

 Score = 19.6 bits (39), Expect = 9.6,   Method: Composition-based stats.
 Identities = 6/16 (37%), Positives = 12/16 (75%)

Query: 42  YAHVKSGEIKPSRIES 57
           +AHVK G ++ S +++
Sbjct: 212 FAHVKQGYLEASNVDA 227


>gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 652

 Score = 19.6 bits (39), Expect = 9.6,   Method: Composition-based stats.
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 35  ADVIELIYAHVKSGEIK 51
           +D  EL+Y H + GE +
Sbjct: 441 SDDSELLYIHARFGETR 457


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.134    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,765
Number of Sequences: 1233
Number of extensions: 1317
Number of successful extensions: 9
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 71
length of database: 328,796
effective HSP length: 42
effective length of query: 29
effective length of database: 277,010
effective search space:  8033290
effective search space used:  8033290
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.1 bits)
S2: 31 (16.5 bits)