Query         gi|254781072|ref|YP_003065485.1| hypothetical protein CLIBASIA_04870 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 190
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 39220
Date          Mon May 30 04:06:33 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781072.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 pfam09628 YvfG YvfG protein. Y  74.1       4  0.0001   22.0   3.4   43   90-136    26-68  (68)
  2 pfam11527 ARL2_Bind_BART The A  49.9      22 0.00056   16.9   3.9   36  125-160    45-81  (120)
  3 PRK05352 Na(+)-translocating N  44.1      24 0.00061   16.6   2.9   45  134-178   397-447 (448)
  4 PRK11106 queuosine biosynthesi  39.8      31 0.00078   15.9   3.1   52  131-182   162-227 (231)
  5 pfam08231 SYF2 SYF2 splicing f  34.3      24 0.00061   16.7   1.7   19  123-141   138-156 (157)
  6 COG5188 PRP9 Splicing factor 3  32.9      39   0.001   15.2   4.3   43   90-132   280-322 (470)
  7 pfam06518 DUF1104 Protein of u  31.5      41  0.0011   15.0   4.3   71   79-161    42-123 (142)
  8 PRK00957 methionine synthase;   29.2      45  0.0011   14.7   3.6   23  137-159   148-172 (307)
  9 KOG3040 consensus               28.0      23  0.0006   16.7   0.8   43  112-154    18-70  (262)
 10 TIGR01233 lacG 6-phospho-beta-  27.1      10 0.00027   19.1  -1.2   23   78-100   444-466 (473)
 11 pfam07462 MSP1_C Merozoite sur  26.9      39 0.00098   15.2   1.7   14   86-99    153-166 (574)
 12 TIGR00625 tfb2 Transcription f  25.9      51  0.0013   14.4   2.1   31   71-110   226-256 (507)
 13 COG1689 Uncharacterized protei  24.6      54  0.0014   14.2   3.1  119   13-146    29-153 (274)
 14 KOG4098 consensus               23.4      57  0.0015   14.0   3.8   26  115-140    87-112 (140)
 15 TIGR02812 fadR_gamma fatty aci  22.8      58  0.0015   14.0   2.5   50   60-114   209-261 (275)
 16 PRK10879 proline aminopeptidas  20.7      61  0.0016   13.8   1.7   37   98-137   164-200 (436)

No 1  
>pfam09628 YvfG YvfG protein. Yvfg is a hypothetical protein of 71 residues expressed in some bacteria. The monomer consists of two parallel alpha helices, and the protein crystallises as a homo-dimer.
Probab=74.14  E-value=4  Score=22.02  Aligned_cols=43  Identities=35%  Similarity=0.490  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999995156710201999999999999988899999
Q gi|254781072|r   90 FKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKE  136 (190)
Q Consensus        90 fkaltkyyksvvaelrefglgksaieieeitkavdtltrayneykke  136 (190)
                      ..|+..||+||+..+-.-.+.|.|.-|.    ....|..|||.-++|
T Consensus        26 IhA~NaYYksV~~si~~Dqi~KNA~~ik----RiqHLdEAY~KV~~E   68 (68)
T pfam09628        26 IHALNAYYKSVAGSILADQIAKNADLIK----RIQHLDEAYNKVAQE   68 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCC
T ss_conf             9999999999999999999985089999----999899999987439


No 2  
>pfam11527 ARL2_Bind_BART The ARF-like 2 binding protein BART. BART binds specifically to ARL2.GTP with a high affinity however it does not bind to ARL2.GDP. It is thought that this specific interaction is due to BART being the first identified ARL2-specific effector. The function is not completely characterized. BART is predominantly cytosolic but can also be found to be associated with mitochondria. BART is also involved in binding to the adenine nucleotide transporter ANT1.
Probab=49.90  E-value=22  Score=16.92  Aligned_cols=36  Identities=28%  Similarity=0.488  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HCHHCCCCCCCHHH
Q ss_conf             9999888999999999999997-12102330101246
Q gi|254781072|r  125 TLTRAYNEYKKEIRELIEEFIE-LGFDQCDECDLCSE  160 (190)
Q Consensus       125 tltrayneykkeirelieefie-lgfdqcdecdlcse  160 (190)
                      .-|--||+|+.-+-.+|+.|+. +|+..-.=...|..
T Consensus        45 eyt~I~~ey~~lve~~l~~~l~~~g~~~~~f~~~~~~   81 (120)
T pfam11527        45 EYTEIHKEYKELIEKLLESFLKEVGISPEQFEEACLS   81 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             9999999999999999999998759999999999986


No 3  
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=44.09  E-value=24  Score=16.63  Aligned_cols=45  Identities=27%  Similarity=0.282  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHCHHCCCC--CCCHH----HHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999712102330--10124----6788888777899999999
Q gi|254781072|r  134 KKEIRELIEEFIELGFDQCDE--CDLCS----EKADVIQKKRIAFEMVERE  178 (190)
Q Consensus       134 kkeirelieefielgfdqcde--cdlcs----ekadviqkkriafemvere  178 (190)
                      |--+-.-+|+..+||.-.|+|  |.|||    -|.|+-+--|-..++.+.|
T Consensus       397 ka~~~~d~e~~e~lGi~e~~eED~alcsyvCpSK~e~~~i~r~~L~~~~kE  447 (448)
T PRK05352        397 RALIAGDTDEAQALGALELDEEDLALCTFVCPGKYEYGPILRDCLDRIEKE  447 (448)
T ss_pred             HHHHCCCHHHHHHCCCCCCCHHHCCEEEEECCCHHHHHHHHHHHHHHHHHC
T ss_conf             998706999998759903385364146458886124899999999999764


No 4  
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=39.83  E-value=31  Score=15.89  Aligned_cols=52  Identities=19%  Similarity=0.250  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHCHH--------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999971210--------------23301012467888887778999999999986
Q gi|254781072|r  131 NEYKKEIRELIEEFIELGFD--------------QCDECDLCSEKADVIQKKRIAFEMVEREFAEK  182 (190)
Q Consensus       131 neykkeirelieefielgfd--------------qcdecdlcsekadviqkkriafemverefaek  182 (190)
                      +--|.||-.|.++-.+||++              .|..|+-|.+...-.+.-..-=..|-+-|-||
T Consensus       162 ~l~K~eiv~l~~~~~~L~~p~~~TwSCY~g~~g~~CG~C~sC~~R~~gF~e~~~~~p~~~~~~~~~  227 (231)
T PRK11106        162 WLDKAETWALADYYGQLDLVRHETLTCYNGIKGDGCGHCAACHLRANGLNHYLANKPAVMAALKQK  227 (231)
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             788889999998616668650235527597999989989328889999999555881999999886


No 5  
>pfam08231 SYF2 SYF2 splicing factor. Proteins in this family are involved in cell cycle progression and pre-mRNA splicing.
Probab=34.34  E-value=24  Score=16.66  Aligned_cols=19  Identities=32%  Similarity=0.620  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999998889999999999
Q gi|254781072|r  123 VDTLTRAYNEYKKEIRELI  141 (190)
Q Consensus       123 vdtltrayneykkeireli  141 (190)
                      -.-|.|+|++|.+|||.-.
T Consensus       138 NkKL~R~y~kYT~EIk~NL  156 (157)
T pfam08231       138 NKKLDRFYDKYTAEIKQNL  156 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHC
T ss_conf             9999999988799998646


No 6  
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=32.94  E-value=39  Score=15.16  Aligned_cols=43  Identities=26%  Similarity=0.316  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999515671020199999999999998889
Q gi|254781072|r   90 FKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNE  132 (190)
Q Consensus        90 fkaltkyyksvvaelrefglgksaieieeitkavdtltrayne  132 (190)
                      .+-+++|...++.+.|+|-+-+-||.-.|-...++.|+|-+-+
T Consensus       280 l~r~~kyl~d~~s~trs~V~r~la~ta~ER~aei~~l~r~~~~  322 (470)
T COG5188         280 LHRYLKYLGDPVSETRSLVLRSLAITAKERKAEISLLSRRKKQ  322 (470)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999998088667899999999987778888776898877645


No 7  
>pfam06518 DUF1104 Protein of unknown function (DUF1104). This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.
Probab=31.54  E-value=41  Score=15.01  Aligned_cols=71  Identities=28%  Similarity=0.517  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHH-HHHHHHHHHHHHHH---------HHHHH
Q ss_conf             54656878899-999999999999999951567102019999999999999-88899999999999---------99971
Q gi|254781072|r   79 FYIDFRTELKY-FKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTR-AYNEYKKEIRELIE---------EFIEL  147 (190)
Q Consensus        79 fyidfrtelky-fkaltkyyksvvaelrefglgksaieieeitkavdtltr-ayneykkeirelie---------efiel  147 (190)
                      =|+||+.|+.- .+.++      +.|-+.|--+-.    +...++.|.+|- -|++|+++|||-+.         |.-|.
T Consensus        42 e~~Dy~~Ei~KR~~~m~------~~eak~F~~~~k----~~~~Kn~dkMSved~~k~rk~i~e~~~k~~~~Ms~kE~re~  111 (142)
T pfam06518        42 EVVDYRMEIKKRLKKMK------EEEAKNFHAQFK----KAMRKNLSKLSVEDRKKRRKEVREELQKKTKGMSAKEIREK  111 (142)
T ss_pred             HHHHHHHHHHHHHHHCC------HHHHHHHHHHHH----HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHC
T ss_conf             44789999999997576------999999999999----99999898636999999999999999999874369999983


Q ss_pred             CHHCCCCCCCHHHH
Q ss_conf             21023301012467
Q gi|254781072|r  148 GFDQCDECDLCSEK  161 (190)
Q Consensus       148 gfdqcdecdlcsek  161 (190)
                      |++.|+.  .|+.+
T Consensus       112 GL~~~~~--~~~g~  123 (142)
T pfam06518       112 GLNVCNN--VCSGK  123 (142)
T ss_pred             CCCCCCC--CCCCC
T ss_conf             8972012--13587


No 8  
>PRK00957 methionine synthase; Provisional
Probab=29.24  E-value=45  Score=14.75  Aligned_cols=23  Identities=22%  Similarity=0.143  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHCHH--CCCCCCCHH
Q ss_conf             99999999971210--233010124
Q gi|254781072|r  137 IRELIEEFIELGFD--QCDECDLCS  159 (190)
Q Consensus       137 irelieefielgfd--qcdecdlcs  159 (190)
                      ++.-|..+.+.|.+  |-||..+..
T Consensus       148 l~~Ei~~l~~aG~~~IQiDEP~l~~  172 (307)
T PRK00957        148 LAKEALALQKAGAAMIQIDEPILST  172 (307)
T ss_pred             HHHHHHHHHHCCCCEEEECCHHHHC
T ss_conf             9999999997499889967557763


No 9  
>KOG3040 consensus
Probab=28.02  E-value=23  Score=16.70  Aligned_cols=43  Identities=37%  Similarity=0.476  Sum_probs=28.2

Q ss_pred             HHEEHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHCHHCCCC
Q ss_conf             0201999999999999988----------899999999999999712102330
Q gi|254781072|r  112 SAIEIEEITKAVDTLTRAY----------NEYKKEIRELIEEFIELGFDQCDE  154 (190)
Q Consensus       112 saieieeitkavdtltray----------neykkeirelieefielgfdqcde  154 (190)
                      --||+..|.+|+..|.|-+          |+-|+.-|+|.+..+.||||--.+
T Consensus        18 Lh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~ee   70 (262)
T KOG3040          18 LHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSEE   70 (262)
T ss_pred             EECCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf             76045668777999999974672699975676026899999999817775578


No 10 
>TIGR01233 lacG 6-phospho-beta-galactosidase; InterPro: IPR005928    6-phospho-beta-galactosidase (3.2.1.85 from EC) is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.  A 6-phospho-beta-D-galactoside + H2O = an alcohol + 6-phospho-D-galactose The genes coding for the enzymes of the tagatose 6-phosphate pathway have been found to be part of the lac operon together with the genes coding for the lactose-phosphotransferase system and the phospho-beta-galactosidase in Lactococcus lactis, Staphlococcus aureus, and Streptococcus mutans. ; GO: 0004553 hydrolase activity hydrolyzing O-glycosyl compounds, 0019512 lactose catabolic process via tagatose-6-phosphate.
Probab=27.10  E-value=10  Score=19.13  Aligned_cols=23  Identities=39%  Similarity=0.876  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             55465687889999999999999
Q gi|254781072|r   78 AFYIDFRTELKYFKALTKYYKSV  100 (190)
Q Consensus        78 afyidfrtelkyfkaltkyyksv  100 (190)
                      -||+||.|.-.|.|.-..+||+|
T Consensus       444 LFyVDF~TQ~RY~K~SA~WyK~~  466 (473)
T TIGR01233       444 LFYVDFDTQERYIKKSAEWYKKL  466 (473)
T ss_pred             CEEEECCCCCCCCCHHHHHHHHC
T ss_conf             35775661235310005776410


No 11 
>pfam07462 MSP1_C Merozoite surface protein 1 (MSP1) C-terminus. This family represents the C-terminal region of merozoite surface protein 1 (MSP1) which are found in a number of Plasmodium species. MSP-1 is a 200-kDa protein expressed on the surface of the P. vivax merozoite. MSP-1 of Plasmodium species is synthesized as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19-kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate.
Probab=26.92  E-value=39  Score=15.21  Aligned_cols=14  Identities=57%  Similarity=0.952  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             88999999999999
Q gi|254781072|r   86 ELKYFKALTKYYKS   99 (190)
Q Consensus        86 elkyfkaltkyyks   99 (190)
                      -|||+||+.|||-+
T Consensus       153 LLKyYKar~KYY~g  166 (574)
T pfam07462       153 LLKYYKARVKYYTG  166 (574)
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             99999998888528


No 12 
>TIGR00625 tfb2 Transcription factor tfb2; InterPro: IPR004598 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p52 subunit.; GO: 0003702 RNA polymerase II transcription factor activity, 0006281 DNA repair, 0006355 regulation of transcription DNA-dependent, 0005634 nucleus.
Probab=25.86  E-value=51  Score=14.39  Aligned_cols=31  Identities=32%  Similarity=0.547  Sum_probs=22.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9786346554656878899999999999999999951567
Q gi|254781072|r   71 SPKELSKAFYIDFRTELKYFKALTKYYKSVVAELREFGLG  110 (190)
Q Consensus        71 spkelskafyidfrtelkyfkaltkyyksvvaelrefglg  110 (190)
                      +--+|.||+-||+-++         --.-..-.||||||-
T Consensus       226 g~l~lGkaYsvd~lsd---------t~~imLqdlReyGLV  256 (507)
T TIGR00625       226 GALELGKAYSVDALSD---------TQRIMLQDLREYGLV  256 (507)
T ss_pred             HHHHCCCHHEEHHHHH---------HHHHHHHHHHHHCCE
T ss_conf             2543142000025548---------999999975630754


No 13 
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.56  E-value=54  Score=14.19  Aligned_cols=119  Identities=27%  Similarity=0.314  Sum_probs=60.3

Q ss_pred             CCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHH
Q ss_conf             2186200002342220444----44399999999999999998776666554455533113697863465-546568788
Q gi|254781072|r   13 SKIPDAKFGSFLQIRSKES----VINKEFVTKVEELYEKAQKAHKKRDKVYGAYDKVSSHKKSPKELSKA-FYIDFRTEL   87 (190)
Q Consensus        13 skipdakfgsflqirskes----vinkefvtkveelyekaqkahkkrdkvygaydkvsshkkspkelska-fyidfrtel   87 (190)
                      +..||.--..|..|++-++    |-.+|  ..+|-||...|.+--.-     |+.-.+-.--..+.+.+. |-.   .-+
T Consensus        29 ~~Lpdti~~TyYAi~i~s~lg~evPr~E--ktiefL~d~~qt~~~~~-----a~~~~~l~~lg~~d~~r~~~~l---~~~   98 (274)
T COG1689          29 SQLPDTINDTYYAIKIYSLLGHEVPRKE--KTIEFLYDQMQTAGVGV-----AMAIEFLRILGAKDLARNKMLL---LFL   98 (274)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHHHHHHHH-----HHHHHHHHHHCCCCCCHHHHHH---HHH
T ss_conf             0675132200121124665077675088--89999998888765679-----9999999874344424026888---876


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_conf             99999999999999999951567102019999999999999888-999999999999997
Q gi|254781072|r   88 KYFKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYN-EYKKEIRELIEEFIE  146 (190)
Q Consensus        88 kyfkaltkyyksvvaelrefglgksaieieeitkavdtltrayn-eykkeirelieefie  146 (190)
                      ||+++-.||--+.-.- -+||   ++ .--|+|--++++-+.+| +|-.|++++|-+|..
T Consensus        99 ~~~~~e~Kf~~~lggs-~~f~---t~-~~Le~ty~~~~~l~~~n~~~~eE~k~~v~~~~r  153 (274)
T COG1689          99 KYNPLEEKFAVGLGGS-EEFG---TA-TPLEATYWMMSALNMVNYEYLEEMKEKVIEFVR  153 (274)
T ss_pred             HCCCHHHHHHHHCCCE-EECC---CC-CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             3374357786512761-0027---88-458999999999997186731778999999956


No 14 
>KOG4098 consensus
Probab=23.39  E-value=57  Score=14.04  Aligned_cols=26  Identities=27%  Similarity=0.381  Sum_probs=14.3

Q ss_pred             EHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             19999999999999888999999999
Q gi|254781072|r  115 EIEEITKAVDTLTRAYNEYKKEIREL  140 (190)
Q Consensus       115 eieeitkavdtltrayneykkeirel  140 (190)
                      .++.|++.+..|+..+-.-.||..+.
T Consensus        87 nke~i~~~i~~l~~qL~~k~kElnkf  112 (140)
T KOG4098          87 NKENIEKVIKKLTDQLVQKGKELNKF  112 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             18889999999999999999999998


No 15 
>TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR; InterPro: IPR014178   Members of this entry are transcriptional regulators of fatty acid metabolism (FadR), including both biosynthesis and beta-oxidation reactions, which are found exclusively in a subset of Gammaproteobacteria with strictly one copy per genome. Proteins have an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR when expressed in Escherichia coli shows differences in regulatory response and fatty acid binding profiles. All members of this entry are expected to have the same function.; GO: 0000062 acyl-CoA binding, 0003677 DNA binding, 0003700 transcription factor activity, 0019217 regulation of fatty acid metabolic process.
Probab=22.78  E-value=58  Score=13.96  Aligned_cols=50  Identities=26%  Similarity=0.464  Sum_probs=33.9

Q ss_pred             HHHHHHHHCC-CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHE
Q ss_conf             4455533113-697--863465546568788999999999999999999515671020
Q gi|254781072|r   60 GAYDKVSSHK-KSP--KELSKAFYIDFRTELKYFKALTKYYKSVVAELREFGLGKSAI  114 (190)
Q Consensus        60 gaydkvsshk-ksp--kelskafyidfrtelkyfkaltkyyksvvaelrefglgksai  114 (190)
                      |-|++|.+|= .+|  .||++.||.+.+.-     +...-+..|+.-+|.+|.--|+|
T Consensus       209 glY~RiG~yYF~~peaReLA~~FY~~L~~l-----c~~~~~d~v~~~~R~YG~~Sg~i  261 (275)
T TIGR02812       209 GLYTRIGLYYFASPEARELALQFYKELQEL-----CKAGEHDEVPDLIRQYGIESGAI  261 (275)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-----HHCCCHHHHHHHHHHHCHHHHHH
T ss_conf             455555110158878889999998999999-----72058126899998718247999


No 16 
>PRK10879 proline aminopeptidase P II; Provisional
Probab=20.66  E-value=61  Score=13.82  Aligned_cols=37  Identities=24%  Similarity=0.151  Sum_probs=28.1

Q ss_pred             HHHHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999951567102019999999999999888999999
Q gi|254781072|r   98 KSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEI  137 (190)
Q Consensus        98 ksvvaelrefglgksaieieeitkavdtltrayneykkei  137 (190)
                      .+.+.+||-   =||.-||+.|.+|.+--..|+.+--+.+
T Consensus       164 ~~li~elR~---IKs~~EI~~mr~A~~It~~a~~~~m~~~  200 (436)
T PRK10879        164 RPWVHEMRL---FKSPEEIAVLRRAGEISALAHTRAMEKC  200 (436)
T ss_pred             HHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             889999866---7999999999999999999999998536


Done!