Query gi|254781072|ref|YP_003065485.1| hypothetical protein CLIBASIA_04870 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 190
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 00:24:46 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781072.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gsv_A Hypothetical protein YV 80.9 2.1 8.8E-05 22.4 4.7 48 89-140 26-73 (80)
2 2kp7_A Crossover junction endo 26.2 31 0.0013 14.4 5.3 71 25-98 6-83 (87)
3 2asw_A Hypothetical protein AF 26.1 31 0.0013 14.4 2.2 50 93-142 5-56 (56)
4 3lb6_A Interleukin-13, IL-13; 16.1 49 0.0021 13.0 2.0 17 135-151 27-43 (132)
5 3bpo_A Interleukin 13; IL4, IL 15.4 51 0.0021 12.9 2.1 11 90-100 97-107 (127)
6 2cpg_A REPA protein, transcrip 14.6 53 0.0022 12.7 3.2 27 98-135 15-41 (45)
7 1e8o_B SRP14, signal recogniti 12.8 60 0.0025 12.4 2.1 18 33-50 4-21 (106)
8 1u84_A Hypothetical protein; s 11.1 68 0.0028 12.0 2.5 59 100-163 16-76 (90)
9 1q1v_A DEK protein; winged-hel 11.0 68 0.0029 12.0 2.5 18 130-147 51-68 (70)
10 1jy2_P Fibrinogen gamma-B chai 10.0 65 0.0027 12.2 0.6 19 9-27 4-22 (48)
No 1
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=80.86 E-value=2.1 Score=22.44 Aligned_cols=48 Identities=33% Similarity=0.531 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999951567102019999999999999888999999999
Q gi|254781072|r 89 YFKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIREL 140 (190)
Q Consensus 89 yfkaltkyyksvvaelrefglgksaieieeitkavdtltrayneykkeirel 140 (190)
-..|+..||+|||..|-.-.|.|.|.-|.. ...|..|||.-++|-..|
T Consensus 26 KIhAmNaYYrsVvstlvqDqltKNA~vlkR----iqHLdEAYqKVk~ee~~~ 73 (80)
T 2gsv_A 26 KIHAMNSYYRSVVSTLVQDQLTKNAVVLKR----IQHLDEAYNKVKRGESKL 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSCHHHHHHH----HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999730799999----999999999998888754
No 2
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=26.22 E-value=31 Score=14.40 Aligned_cols=71 Identities=17% Similarity=0.031 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 222044444399999999999999998776666554455533----11---36978634655465687889999999999
Q gi|254781072|r 25 QIRSKESVINKEFVTKVEELYEKAQKAHKKRDKVYGAYDKVS----SH---KKSPKELSKAFYIDFRTELKYFKALTKYY 97 (190)
Q Consensus 25 qirskesvinkefvtkveelyekaqkahkkrdkvygaydkvs----sh---kkspkelskafyidfrtelkyfkaltkyy 97 (190)
++|.--|-.|..|+.-++++.+.++.-. ++..-+|.+.- ++ -.|++++..-=.|.-+.--+.-.-|.+|+
T Consensus 6 ~~r~~Ps~~N~lfi~~L~e~~~~~~~k~---~k~~~aY~kA~~sLk~~p~~I~s~~~l~~l~GIG~~i~~ki~e~L~~yc 82 (87)
T 2kp7_A 6 SVRPLPVCPNPLFVRWLTEWRDEAASRG---RHTRFVFQKALRSLQRYPLPLRSGKEAKILQHFGDRLCRMLDEKLKQHL 82 (87)
T ss_dssp --CCCCCSCCCHHHHHHHHHHHHHHHHT---CTTHHHHHHHHHHHHHCCSCCCSHHHHHTCTTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 8899999988999999999999998707---3579999999999997899888899997279977899999999999999
Q ss_pred H
Q ss_conf 9
Q gi|254781072|r 98 K 98 (190)
Q Consensus 98 k 98 (190)
+
T Consensus 83 ~ 83 (87)
T 2kp7_A 83 A 83 (87)
T ss_dssp H
T ss_pred H
T ss_conf 8
No 3
>2asw_A Hypothetical protein AF1503; homodimer, parallel coiled-coil, complementary X-DA packing, unknown function; NMR {Archaeoglobus fulgidus} SCOP: a.274.1.1 PDB: 2asx_A
Probab=26.10 E-value=31 Score=14.40 Aligned_cols=50 Identities=10% Similarity=0.248 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHCCCCCHHEEHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999515671020199999--9999999988899999999999
Q gi|254781072|r 93 LTKYYKSVVAELREFGLGKSAIEIEEIT--KAVDTLTRAYNEYKKEIRELIE 142 (190)
Q Consensus 93 ltkyyksvvaelrefglgksaieieeit--kavdtltrayneykkeirelie 142 (190)
+++--..+....++.+-|.-...+.+.. .-+..|.+++|.....++++|+
T Consensus 5 I~~Pl~~l~~~~~~i~~Gd~~~~i~~~~~~dEig~La~~fn~M~~~l~~~ie 56 (56)
T 2asw_A 5 ITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAME 56 (56)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCCTTTTCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999998799988379899965999999999999999999739
No 4
>3lb6_A Interleukin-13, IL-13; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_B*
Probab=16.14 E-value=49 Score=12.99 Aligned_cols=17 Identities=41% Similarity=0.714 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHCHHC
Q ss_conf 99999999999712102
Q gi|254781072|r 135 KEIRELIEEFIELGFDQ 151 (190)
Q Consensus 135 keirelieefielgfdq 151 (190)
++.+|||||...+.-+|
T Consensus 27 ~aLkELIeeLvnitqnq 43 (132)
T 3lb6_A 27 TALRELIEELVNITQNQ 43 (132)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHCCCCC
T ss_conf 88999999998606556
No 5
>3bpo_A Interleukin 13; IL4, IL13, IL4R, IL13R, cytokine, alternative splicing, glycoprotein, immune response, membrane; HET: NAG; 3.00A {Homo sapiens} PDB: 1ijz_A 1ik0_A 3g6d_A 3l5w_I 3l5x_A* 3l5y_A 1ga3_A
Probab=15.39 E-value=51 Score=12.86 Aligned_cols=11 Identities=27% Similarity=0.199 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254781072|r 90 FKALTKYYKSV 100 (190)
Q Consensus 90 fkaltkyyksv 100 (190)
.|.|-.|++.+
T Consensus 97 vK~LL~~~r~~ 107 (127)
T 3bpo_A 97 VKDLLLHLKKL 107 (127)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 6
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=14.64 E-value=53 Score=12.73 Aligned_cols=27 Identities=41% Similarity=0.621 Sum_probs=16.6
Q ss_pred HHHHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999515671020199999999999998889999
Q gi|254781072|r 98 KSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKK 135 (190)
Q Consensus 98 ksvvaelrefglgksaieieeitkavdtltrayneykk 135 (190)
+..----+|-||.|||+ ++-|..+|++
T Consensus 15 ~~L~~~akekGlSKSal-----------ltvALe~y~k 41 (45)
T 2cpg_A 15 ENLEKMAREMGLSKSAM-----------ISVALENYKK 41 (45)
T ss_dssp HHHHHHHHHHTCCHHHH-----------HHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHH-----------HHHHHHHHHH
T ss_conf 99999999748519999-----------9999999872
No 7
>1e8o_B SRP14, signal recognition particle 14 kDa protein; ALU ribonucleoprotein particle, protein recognition of AN RNA U-turn, translational control; HET: GDP; 3.20A {Homo sapiens} SCOP: d.49.1.1 PDB: 1e8s_B 1ry1_D*
Probab=12.83 E-value=60 Score=12.39 Aligned_cols=18 Identities=22% Similarity=0.589 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 439999999999999999
Q gi|254781072|r 33 INKEFVTKVEELYEKAQK 50 (190)
Q Consensus 33 inkefvtkveelyekaqk 50 (190)
-|.+|.+++.+||+++..
T Consensus 4 ~nd~FL~~Lt~Lf~~~k~ 21 (106)
T 1e8o_B 4 ESEQFLTELTRLFQKCRT 21 (106)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHCCC
T ss_conf 738999999999985676
No 8
>1u84_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, PSI midwest center for structural genomics; 1.60A {Geobacillus stearothermophilus} SCOP: a.230.1.1
Probab=11.07 E-value=68 Score=12.02 Aligned_cols=59 Identities=24% Similarity=0.345 Sum_probs=38.5
Q ss_pred HHHHHHHCCCCCHHEE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCHHHHHH
Q ss_conf 9999995156710201--999999999999988899999999999999712102330101246788
Q gi|254781072|r 100 VVAELREFGLGKSAIE--IEEITKAVDTLTRAYNEYKKEIRELIEEFIELGFDQCDECDLCSEKAD 163 (190)
Q Consensus 100 vvaelrefglgksaie--ieeitkavdtltrayneykkeirelieefielgfdqcdecdlcsekad 163 (190)
.++..--||+|...-+ +.+|..||-... --+++-+-|....+..|+++---.-|-+.|.
T Consensus 16 ~i~~WDPf~~G~d~YetE~~dvv~av~~~d-----d~~~LA~~IQ~Iye~SFee~~P~e~C~k~A~ 76 (90)
T 1u84_A 16 WIGAWDPFGLGKDAYDVEAASVLQAVYETE-----DARTLAARIQSIYEFAFDEPIPFPHCLKLAR 76 (90)
T ss_dssp HHHHHCTTSSCGGGGHHHHHHHHHHHTTCS-----CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 998069877897645437999999999418-----8899999999999987413476899999999
No 9
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=11.01 E-value=68 Score=12.00 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 889999999999999971
Q gi|254781072|r 130 YNEYKKEIRELIEEFIEL 147 (190)
Q Consensus 130 yneykkeirelieefiel 147 (190)
..++|..|+++|++|+-+
T Consensus 51 Ls~rK~~I~~~I~~~Ls~ 68 (70)
T 1q1v_A 51 LTERKDFIKTTVKELISL 68 (70)
T ss_dssp CSHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHC
T ss_conf 388999999999999844
No 10
>1jy2_P Fibrinogen gamma-B chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_P 2a45_I*
Probab=10.05 E-value=65 Score=12.15 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=13.4
Q ss_pred CCCCCCCCCCHHHHHHHHH
Q ss_conf 7751218620000234222
Q gi|254781072|r 9 NNDTSKIPDAKFGSFLQIR 27 (190)
Q Consensus 9 nndtskipdakfgsflqir 27 (190)
+.|.--|||..||||-.-.
T Consensus 4 t~~ncCild~rFGsYCPTT 22 (48)
T 1jy2_P 4 TRDNCCILDERFGSYCPTT 22 (48)
T ss_dssp -CCSSCCSBTTTBCEEECH
T ss_pred CCCCCCCCCCCCCCCCCCC
T ss_conf 6465414751013769851
Done!