RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781072|ref|YP_003065485.1| hypothetical protein
CLIBASIA_04870 [Candidatus Liberibacter asiaticus str. psy62]
(190 letters)
>gnl|CDD|36302 KOG1086, KOG1086, KOG1086, Cytosolic sorting
protein/ADP-ribosylation factor effector GGA
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 594
Score = 30.8 bits (69), Expect = 0.25
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 17/114 (14%)
Query: 34 NKEFVTKVEELYEKAQKAHKKRDKVYGAYDKVSSHKKSPKELSKAFYIDFRTELKYFKAL 93
NK T V+E K +K K+ + ++V+++ K +E+ +D+ E
Sbjct: 194 NKLIKTLVKEEEHKLEKISKRVKAL----EEVNNNVKLLEEM----LLDYSQEGNASPDN 245
Query: 94 TKYYKSVVAE---LRE--FGLGKSAIE----IEEITKAVDTLTRAYNEYKKEIR 138
+ V LR F L + + EI +A D LTR N YK
Sbjct: 246 ELLLQEVYNRCEQLRPTLFRLASETEDNDPALAEILQANDNLTRVINLYKTPKE 299
>gnl|CDD|38820 KOG3614, KOG3614, KOG3614, Ca2+/Mg2+-permeable cation channels
(LTRPC family) [Inorganic ion transport and metabolism,
Signal transduction mechanisms].
Length = 1381
Score = 29.9 bits (67), Expect = 0.50
Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 4/128 (3%)
Query: 31 SVINKEFVTKVEELYEKAQKA-HKKRDKVYGAYDKVSSHKKSPKELSKAFYIDFRTELKY 89
S F + LY+K + + K K + +L
Sbjct: 509 SYTRPRFRNLYQNLYKKGSFGVDRLGQGFGPPNVFCNDKSKRDKSEEEDLSRYPIRDLLI 568
Query: 90 FKALTKYYK--SVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEFIEL 147
+ L + E + K+ + + K++ ++E KE++ L +EF L
Sbjct: 569 WAVLLNRQGMAKCLWAHGEEAVAKALVASR-LYKSLAHEAHDWHEAAKELKTLSDEFEGL 627
Query: 148 GFDQCDEC 155
+ DEC
Sbjct: 628 AVELFDEC 635
>gnl|CDD|36214 KOG0996, KOG0996, KOG0996, Structural maintenance of chromosome
protein 4 (chromosome condensation complex Condensin,
subunit C) [Chromatin structure and dynamics, Cell cycle
control, cell division, chromosome partitioning].
Length = 1293
Score = 28.8 bits (64), Expect = 1.1
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 11/135 (8%)
Query: 25 QIRSKESVINKEFVTKVEELYEKAQKAHKKRDKVYGAYDKVSSH-KKSPKELSKA----- 78
+I+ ++ I++ KV+ +K +K +++ DK+ K++ K S + ++KA
Sbjct: 886 RIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLS 945
Query: 79 ----FYIDFRTELKYFKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYK 134
D EL K + AEL + ++ ++EI K + L K
Sbjct: 946 ELEREIEDTEKELDDLTEELKGLEEKAAELEK-EYKEAEESLKEIKKELRDLKSELENIK 1004
Query: 135 KEIRELIEEFIELGF 149
K EL E I++
Sbjct: 1005 KSENELKAERIDIEN 1019
>gnl|CDD|34787 COG5188, PRP9, Splicing factor 3a, subunit 3 [RNA processing and
modification].
Length = 470
Score = 27.4 bits (60), Expect = 2.3
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 54 KRDKVYGAYDKVSSHKKSPKELSKAFYIDFRTELKYFKALTKYYKSVVAELREFGLGKSA 113
R KV+ + + H K + + Y ++ KY V+E R L A
Sbjct: 249 SRSKVFEYHLEGKRHCKEGQGKEEFVYSEYV-----LHRYLKYLGDPVSETRSLVLRSLA 303
Query: 114 IEIEEITKAVDTLTRAYNE 132
I +E + L+R +
Sbjct: 304 ITAKERKAEISLLSRRKKQ 322
>gnl|CDD|145275 pfam02006, DUF137, Protein of unknown function DUF137. This family
of archaeal proteins has no known function.
Length = 178
Score = 27.6 bits (62), Expect = 2.4
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 116 IEEITKAVDTLTRAYNEYKKEIRELIEEFIELGFD 150
++ IT+A+ LT E KK RE +E+ ++ +D
Sbjct: 133 VDNITRAIPNLTELAKELKKADREELEKIVD-NYD 166
>gnl|CDD|39919 KOG4721, KOG4721, KOG4721, Serine/threonine protein kinase,
contains leucine zipper domain [Signal transduction
mechanisms].
Length = 904
Score = 27.4 bits (60), Expect = 2.6
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 22 SFLQIRSKESVINKEFVTKVEELYEKAQKAHKKRDKVYGAYDKVSSHKKSPKELSKAFYI 81
SF QI + + E ++ EE Y K+Q + R++V ++K++S L +
Sbjct: 357 SFRQILLHLDIASPELLSTTEETYFKSQASW--REEVKLHFEKITSEGTCIHRLEEELIR 414
Query: 82 DFRTELKYFKALTKYYK 98
R EL++ + ++Y+
Sbjct: 415 RRREELRHALDIREHYE 431
>gnl|CDD|48186 cd03377, TPP_PFOR_PNO, Thiamine pyrophosphate (TPP family),
PFOR_PNO subfamily, TPP-binding module; composed of
proteins similar to the single subunit pyruvate
ferredoxin oxidoreductase (PFOR) of Desulfovibrio
Africanus, present in bacteria and amitochondriate
eukaryotes. This subfamily also includes proteins
characterized as pyruvate NADP+ oxidoreductase (PNO).
These enzymes are dependent on TPP and a divalent metal
cation as cofactors. PFOR and PNO catalyze the oxidative
decarboxylation of pyruvate to form acetyl-CoA, a
crucial step in many metabolic pathways. Archaea,
anaerobic bacteria and eukaryotes that lack mitochondria
(and therefore pyruvate dehydrogenase) use PFOR to
oxidatively decarboxylate pyruvate, with ferredoxin or
flavodoxin as the electron acceptor. The PFOR from
cyanobacterium Anabaena (NifJ) is required for the
transfer of electrons from pyruvate to flavodoxin, which
reduces nitrogenase. The facultative anaerobic
mitochondrion of the photosynthetic protist Euglena
gracilis oxidizes pyruvate with PNO..
Length = 365
Score = 27.1 bits (60), Expect = 3.2
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 12 TSKIPDAKFGSFLQIRSKESVINKEFVTKVEELYEKAQKAHKKRDKVY 59
SK PD FL ++ + + K + E+L+E+ Q K+R K Y
Sbjct: 313 DSKEPDGPVEEFLNNENRFAALKKANPERAEQLFEQLQADAKERYKRY 360
>gnl|CDD|35504 KOG0283, KOG0283, KOG0283, WD40 repeat-containing protein [Function
unknown].
Length = 712
Score = 26.2 bits (57), Expect = 5.3
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 35 KEFVTKVEELYEKAQKAHKKRDKVYGAYD--KVSSHKKSPKELSKAFY 80
+ Y K+ K ++ Y KV +KKSPKELS
Sbjct: 211 DSDSSSQFHNYLSEPKSSKDKEMKYNLPSRVKVRHYKKSPKELSALTV 258
>gnl|CDD|146306 pfam03598, CdhC, CO dehydrogenase/acetyl-CoA synthase complex beta
subunit.
Length = 412
Score = 26.1 bits (58), Expect = 6.0
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 6/34 (17%)
Query: 30 ESVINKEFVT------KVEELYEKAQKAHKKRDK 57
+I+K VT KV+E+ EKA++ ++ RD+
Sbjct: 141 GPIIDKVQVTIYTDEEKVKEILEKAREIYEARDE 174
>gnl|CDD|147082 pfam04740, Transposase_30, Bacillus transposase protein. This
family of putative transposases includes mostly Bacillus
members. However, we have also found a Bacillus subtilis
bacteriophage SPbetac2 homologue, possibly arising as a
result of horizontal transfer.
Length = 204
Score = 26.1 bits (58), Expect = 6.2
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 114 IEIEEITKAVDTLTRAYNEYKKEIREL---IEEFIELG 148
+++ E+ A+D A E + ++ L I +L
Sbjct: 3 LDVAELISAIDQTISALKELRDQLESLKKAITGVADLD 40
>gnl|CDD|153284 cd07600, BAR_Gvp36, The Bin/Amphiphysin/Rvs (BAR) domain of
Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa
and similar proteins. BAR domains are dimerization,
lipid binding and curvature sensing modules found in
many different proteins with diverse functions including
organelle biogenesis, membrane trafficking or
remodeling, and cell division and migration. Proteomic
analysis shows that Golgi vesicle protein of 36 kDa
(Gvp36) may be involved in vesicular trafficking and
nutritional adaptation. A Saccharomyces cerevisiae
strain deficient in Gvp36 shows defects in growth, in
actin cytoskeleton polarization, in endocytosis, in
vacuolar biogenesis, and in the cell cycle. BAR domains
form dimers that bind to membranes, induce membrane
bending and curvature, and may also be involved in
protein-protein interactions.
Length = 242
Score = 26.2 bits (58), Expect = 6.3
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 31 SVINKEFVTKVEE-LYEKAQKAHKKRDKVYGA---YDKVSSHKKSPKELSK 77
+I KEF K+ E L QKAHK R KV D + KS + K
Sbjct: 128 QLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRLQLDTARAELKSAEPAEK 178
>gnl|CDD|30356 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 25.8 bits (56), Expect = 7.2
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 99 SVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEE 143
+V LR KS EI +I KA + A + IR + E
Sbjct: 146 DLVDRLRLI---KSPAEIAKIRKAAEIADAALEAALEAIRPGMTE 187
>gnl|CDD|146672 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 25.9 bits (57), Expect = 7.8
Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 9/126 (7%)
Query: 44 LYEKAQKAHKKRDKVYGAYDKVSSHKKSPKELSKAFYIDFRTELKYFKALTKYYKSVVAE 103
L KA + K+ ++S K+ EL + D + ++ + K +
Sbjct: 60 LLLKAPVQSVRPQKLEELQGELSELKQQLSELQEEL-EDLEERIAELESELEDLKEDLQL 118
Query: 104 LREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEFIELGFDQCDECDLCSEKAD 163
LRE ++ + + +++L + E KE+REL ++ E + +E + E
Sbjct: 119 LRE--------LLKSLEERLESLEESIKELAKELRELRQDLREEVEELREELERLQENLQ 170
Query: 164 VIQKKR 169
+Q+
Sbjct: 171 RLQEAI 176
>gnl|CDD|35994 KOG0775, KOG0775, KOG0775, Transcription factor SIX and related HOX
domain proteins [Transcription].
Length = 304
Score = 25.4 bits (55), Expect = 9.0
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 35 KEFVTKVEELYEKA--QKAHKKRDKVYGAYDKVSSHKKSP 72
K++ L+ KA ++A K R + GA DK +K P
Sbjct: 129 PHNHPKLQALWLKAHYKEAEKLRGRPLGAVDKYRVRRKFP 168
>gnl|CDD|31389 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 25.4 bits (55), Expect = 9.1
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 97 YKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEFIEL 147
Y+ + AELRE L +++E+ K ++ L + ++E+ EL EE E
Sbjct: 215 YQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEA 265
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.315 0.132 0.356
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,133,531
Number of extensions: 107723
Number of successful extensions: 617
Number of sequences better than 10.0: 1
Number of HSP's gapped: 611
Number of HSP's successfully gapped: 89
Length of query: 190
Length of database: 6,263,737
Length adjustment: 88
Effective length of query: 102
Effective length of database: 4,362,145
Effective search space: 444938790
Effective search space used: 444938790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 54 (24.8 bits)