RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781072|ref|YP_003065485.1| hypothetical protein
CLIBASIA_04870 [Candidatus Liberibacter asiaticus str. psy62]
         (190 letters)



>gnl|CDD|184382 PRK13902, alaS, alanyl-tRNA synthetase; Provisional.
          Length = 900

 Score = 33.3 bits (77), Expect = 0.037
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 48  AQKAHKKRDKVYGAYDKVSSHKKSPKELSKAFYIDFRTELKYFKALTKYYKSVVAELREF 107
            +   +  D +  A + +      P++L K     F  E K  K   +  +  +AEL   
Sbjct: 735 VEYIQELEDLLKEAAEILGV---PPEQLPKTV-ERFFEEWKEQKKEIEKLRKELAELLAS 790

Query: 108 GLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEF 144
            L   A E+  +   V+ +    +E +K   EL +E 
Sbjct: 791 ELLSKAEEVGGVKVVVEEVDADEDELRKIANELAKEG 827



 Score = 27.1 bits (61), Expect = 2.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 114 IEIEEITKAVDTLTRAYNEYKKEIRELIEEFIEL 147
           +  E++ K V+     + E KKEI +L +E  EL
Sbjct: 754 VPPEQLPKTVERFFEEWKEQKKEIEKLRKELAEL 787


>gnl|CDD|150639 pfam09989, DUF2229, CoA enzyme activase uncharacterized domain
           (DUF2229).  Members of this family include various
           bacterial hypothetical proteins, as well as CoA enzyme
           activases. The exact function of this domain has not, as
           yet, been defined.
          Length = 218

 Score = 31.0 bits (71), Expect = 0.17
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 89  YFKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEFIEL 147
             K      K +    ++ G+ K     EEI KAV+        +KK++R+  EE +  
Sbjct: 121 NLKDKEALAKRLYELGKKLGISK-----EEIKKAVEKALEEQEAFKKDLRKKGEEALAY 174


>gnl|CDD|163395 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase.  This family of
           alanyl-tRNA synthetases is limited to the archaea, and
           is a subset of those sequences identified by the model
           pfam07973 covering the second additional domain (SAD) of
           alanyl and threonyl tRNA synthetases.
          Length = 902

 Score = 30.0 bits (68), Expect = 0.41
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 83  FRTELKYFKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIE 142
           F  E K  +   +  K  +AEL+ + L   A  I  +   V+ +    +E ++   +L E
Sbjct: 770 FFEEWKEQRKEIERLKKKLAELKIYELISEAERIGGVEVIVELVDADMDELQEIAEKLAE 829

Query: 143 E 143
           +
Sbjct: 830 K 830


>gnl|CDD|183010 PRK11170, nagA, N-acetylglucosamine-6-phosphate deacetylase;
           Provisional.
          Length = 382

 Score = 29.6 bits (67), Expect = 0.52
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 10/47 (21%)

Query: 137 IRELIEEFIELGFDQCDECDLCSEKADVIQKKRIAFEMVEREFAEKL 183
           IR+   E ++          LC E ADVI K  +A EMV+ E   KL
Sbjct: 148 IRKPDAEMVDF---------LC-ENADVITKVTLAPEMVDAEVIRKL 184


>gnl|CDD|177761 PLN00162, PLN00162, transport protein sec23; Provisional.
          Length = 761

 Score = 28.8 bits (65), Expect = 1.0
 Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 40/119 (33%)

Query: 62  YDKVSSHKKSPKELSKAFYIDFRTELKYFKALTKYYKSVVAELREFGLGKSAIEIEEITK 121
           ++  +S + +P+   + F++ F T           Y+    + R                
Sbjct: 461 FEVANSGQSNPQPPGQQFFLQFLT----------RYQHSNGQTR---------------L 495

Query: 122 AVDTLTRAYNEYKKEIRELIEEFIELGFDQCDECDLCSEKADVIQKKRIAFEMV-EREF 179
            V T+TR + E         EE +  GFDQ        E A V+  +  + +M  E EF
Sbjct: 496 RVTTVTRRWVEGSS-----SEELVA-GFDQ--------EAAAVVMARLASHKMETEEEF 540


>gnl|CDD|169974 PRK09566, nirA, ferredoxin-nitrite reductase; Reviewed.
          Length = 513

 Score = 28.4 bits (64), Expect = 1.3
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 9/48 (18%)

Query: 110 GKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEFIELGFDQCDECDL 157
           GK   +IE+     D L          +++ +E+F ++G++  DE DL
Sbjct: 9   GKKLNKIEKNKAEKDGL---------AVKDELEKFAQIGWEAMDETDL 47


>gnl|CDD|131231 TIGR02176, pyruv_ox_red, pyruvate:ferredoxin (flavodoxin)
            oxidoreductase, homodimeric.  This model represents a
            single chain form of pyruvate:ferredoxin (or flavodoxin)
            oxidoreductase. This enzyme may transfer electrons to
            nitrogenase in nitrogen-fixing species. Portions of this
            protein are homologous to gamma subunit of the four
            subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
          Length = 1165

 Score = 28.2 bits (63), Expect = 1.4
 Identities = 16/47 (34%), Positives = 22/47 (46%)

Query: 13   SKIPDAKFGSFLQIRSKESVINKEFVTKVEELYEKAQKAHKKRDKVY 59
            SK PD+    FL    + + + K F    E L+ KA    K+R K Y
Sbjct: 1114 SKEPDSSVAEFLNGEVRFASLKKSFPDDAERLFNKAAHEAKRRFKEY 1160


>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase;
          Provisional.
          Length = 212

 Score = 28.1 bits (63), Expect = 1.4
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 35 KEFVTKVEELYEKAQKAHKKRDKVYGAYDKVSSHKKSPKELSKAFYIDFRTELKY 89
               K   + E  ++ + K  KV  A  KV  H   P+ L +  Y+D   E+ Y
Sbjct: 1  MPLEEKRRVIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGY 55


>gnl|CDD|179966 PRK05222, PRK05222,
           5-methyltetrahydropteroyltriglutamate--homocysteine
           S-methyltransferase; Provisional.
          Length = 758

 Score = 28.2 bits (64), Expect = 1.5
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 15/57 (26%)

Query: 132 EYKKEIRELIEEFIELGFDQCDECDLCSEKADVIQKKRIAFE---MVEREFAEKLEG 185
           EY+  IRE I   I L   Q +E  L     DV+      FE   MVE  F E+L+G
Sbjct: 458 EYEAFIREEIARAIRL---Q-EELGL-----DVLVHGE--FERNDMVEY-FGEQLDG 502


>gnl|CDD|180186 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
          Length = 619

 Score = 27.1 bits (61), Expect = 3.2
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 29  KESVINKEFVTKVEELYEKAQKAHKKRDKVYGAYDKVSSHKKSPKELSKAFYIDFRTELK 88
            E V+ K     + + Y+K +KA +K+ +   A  K  +  +  ++L +      R   K
Sbjct: 217 PEKVLEK--FKALAKQYKKLRKAQEKKVEGRLAQHKKYAKLR--EKLKEELK-SLRLTSK 271

Query: 89  YFKALTKYYKSVVAELREF 107
               L +  + +   +R  
Sbjct: 272 QIDELVEQLRDINKRVRGQ 290


>gnl|CDD|178135 PLN02520, PLN02520, bifunctional 3-dehydroquinate
           dehydratase/shikimate dehydrogenase.
          Length = 529

 Score = 27.0 bits (60), Expect = 3.3
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 13  SKIPDAKFGSFLQIRS----KESVINKEFVTKVEELYEKAQKAHKKRDKVYGAYDKVSSH 68
           S+I   KFG +L   +    K S   +  +  + +LY   Q       KVYG   K   H
Sbjct: 207 SRILCPKFGGYLTFGTLEAGKVSAPGQPTIKDLLDLYNFRQI--GPDTKVYGIIGKPVGH 264

Query: 69  KKSPKELSKAF 79
            KSP   ++AF
Sbjct: 265 SKSPILHNEAF 275


>gnl|CDD|181932 PRK09529, PRK09529, bifunctional acetyl-CoA decarbonylase/synthase
           complex subunit alpha/beta; Reviewed.
          Length = 711

 Score = 26.4 bits (59), Expect = 4.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)

Query: 40  KVEELYEKAQKAHKKRD 56
           KV EL EKA+  +KKRD
Sbjct: 456 KVLELLEKARAIYKKRD 472


>gnl|CDD|179853 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
           subunit beta; Reviewed.
          Length = 463

 Score = 26.2 bits (58), Expect = 5.8
 Identities = 11/17 (64%), Positives = 14/17 (82%)

Query: 40  KVEELYEKAQKAHKKRD 56
           KVEE  EKA++ +KKRD
Sbjct: 158 KVEEELEKAREIYKKRD 174


>gnl|CDD|161733 TIGR00153, TIGR00153, conserved hypothetical protein TIGR00153.  An
           apparent homolog with a suggested function is Pit
           accessory protein from Sinorhizobium meliloti, which may
           be involved in phosphate (Pi) transport.
          Length = 216

 Score = 26.2 bits (58), Expect = 5.9
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 115 EIEEITKAVDTLTRAYNEYKKEIRELIEEFIELGFDQCDECDLCSEKADVIQK-KRIAFE 173
           + EE+ K +  +    +E K+EIR  +E+   L  D+ D  +L     +++   +  A  
Sbjct: 44  KDEELRKEIIEIEHEADEIKREIRLNLEKGAFLPNDRRDLLELAELLDEILDSLEHAAML 103

Query: 174 MVEREFA 180
              R+F 
Sbjct: 104 YELRKFE 110


>gnl|CDD|184102 PRK13511, PRK13511, 6-phospho-beta-galactosidase; Provisional.
          Length = 469

 Score = 26.1 bits (58), Expect = 6.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 79  FYIDFRTELKYFKALTKYYKSV 100
           FY+DF T+ +Y K    +YK +
Sbjct: 441 FYVDFETQERYPKKSAYWYKKL 462


>gnl|CDD|177823 PLN02165, PLN02165, adenylate isopentenyltransferase.
          Length = 334

 Score = 25.9 bits (57), Expect = 7.2
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 8/47 (17%)

Query: 90  FKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKE 136
           F+ L ++Y  V +     G+ K AI + E         R + +Y  E
Sbjct: 205 FEELAEFYDPVKSGSEPLGIRK-AIGVPE-------FDRYFKKYPPE 243


>gnl|CDD|184308 PRK13761, PRK13761, hypothetical protein; Provisional.
          Length = 248

 Score = 25.5 bits (57), Expect = 7.5
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 116 IEEITKAVDTLTRAYNEYKKEIRELIEEFIELGFD 150
           ++ IT+AV  +T    E KK+ RE +EE +E  +D
Sbjct: 194 VDNITRAVPNMTEYARELKKKDREELEEIVE-NYD 227


>gnl|CDD|162432 TIGR01578, MiaB-like-B, MiaB-like tRNA modifying enzyme,
           archaeal-type.  This clade is a member of a subfamily
           (TIGR00089) and spans the archaea and eukaryotes. The
           only archaeal miaB-like genes are in this clade, while
           eukaryotes have sequences described by this model as
           well as ones falling within the scope of the MiaB
           equivalog model.
          Length = 420

 Score = 25.5 bits (56), Expect = 8.0
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 63  DKVSSHKKSPKELSKAFY---IDFRTELKYFKALTKYYKSVVAELREFGLGKS--AIEIE 117
           +K++  K SP+  + A     I      K  K LTK Y+ V+ E+R+  +G     +  +
Sbjct: 315 EKINITKFSPRPGTPAAKMKRIPTNIVKKRSKRLTKLYEQVLLEMRDNLIGTRVHVLVTK 374

Query: 118 EITKAVDTLTRAY 130
           E          AY
Sbjct: 375 EGKGDSLDDEDAY 387


>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
          Length = 405

 Score = 25.5 bits (56), Expect = 8.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 49  QKAHKKRDKVYGAYDKVSSHKK 70
           + A +K D +YG ++K S  KK
Sbjct: 259 KSAFEKLDSIYGTFEKPSEKKK 280


>gnl|CDD|180691 PRK06778, PRK06778, hypothetical protein; Validated.
          Length = 289

 Score = 25.7 bits (56), Expect = 8.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)

Query: 111 KSAIEIEEITKAVDTLTRAYN 131
           KSA E+ E+  +++T+ R  +
Sbjct: 109 KSATELGELATSINTIARDAH 129


>gnl|CDD|180249 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
          Length = 646

 Score = 25.7 bits (57), Expect = 8.9
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 18/104 (17%)

Query: 40  KVEELYEKAQKAHKKRDKVYGAYDKVSSHKKSPKELSKAFYIDFRTELKYFKALTKYYKS 99
           K E   E+ +K      K+  A DK                   R+ L     L +  K 
Sbjct: 37  KEELSNERLRKLRSLLTKLSEALDK------------------LRSYLPKLNPLREEKKK 78

Query: 100 VVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEE 143
           V  +  E  +     E+E+I K +  L    +E + EI+EL +E
Sbjct: 79  VSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQE 122


>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional.
          Length = 402

 Score = 25.2 bits (56), Expect = 9.8
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 6/34 (17%)

Query: 117 EEITKAVDTLTRAYNEYKK------EIRELIEEF 144
            E+  A+D L  AY E KK      E+R L++ +
Sbjct: 25  PELKPALDELEAAYEEIKKDPDFIAELRYLLKHY 58


>gnl|CDD|130300 TIGR01233, lacG, 6-phospho-beta-galactosidase.  This enzyme is part
           of the tagatose-6-phosphate pathway of
           galactose-6-phosphate degradation.
          Length = 467

 Score = 25.4 bits (55), Expect = 9.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 79  FYIDFRTELKYFKALTKYYKSV 100
           FY+DF T+ +Y K    +YK +
Sbjct: 439 FYVDFDTQERYPKKSAHWYKKL 460


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.315    0.132    0.356 

Gapped
Lambda     K      H
   0.267   0.0778    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,963,320
Number of extensions: 184217
Number of successful extensions: 845
Number of sequences better than 10.0: 1
Number of HSP's gapped: 823
Number of HSP's successfully gapped: 114
Length of query: 190
Length of database: 5,994,473
Length adjustment: 88
Effective length of query: 102
Effective length of database: 4,092,969
Effective search space: 417482838
Effective search space used: 417482838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 54 (24.5 bits)