RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781072|ref|YP_003065485.1| hypothetical protein
CLIBASIA_04870 [Candidatus Liberibacter asiaticus str. psy62]
         (190 letters)



>3hqs_A CAI-1 autoinducer synthase; quorum sensing, CQSA, PLP,
           virulence, acyltransferase, aminotransferase, pyridoxal
           phosphate, transferase; HET: PLP; 1.80A {Vibrio
           cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
           (A:)
          Length = 409

 Score = 28.0 bits (60), Expect = 0.89
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 113 AIEIEEITKAVDTLTRAYNEYKKEIR 138
            +  E+I K ++  + A N      R
Sbjct: 384 DVNDEQIAKIIEVCSDAVNYGDFYFR 409


>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S,
           3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B;
           HET: FAD HEM LMT; 1.78A {Wolinella succinogenes}
           (B:108-241)
          Length = 134

 Score = 27.7 bits (60), Expect = 1.1
 Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 1/51 (1%)

Query: 110 GKSAIE-IEEITKAVDTLTRAYNEYKKEIRELIEEFIELGFDQCDECDLCS 159
           G       + +   +           +E  E          D+C EC  C 
Sbjct: 1   GNWFNGMSQRVESWIHAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCI 51


>3lkd_A Type I restriction-modification system methyltransferase
           subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural
           genomics, PSI-2; 2.25A {Streptococcus thermophilus}
           (A:197-542)
          Length = 346

 Score = 27.8 bits (60), Expect = 1.1
 Identities = 13/144 (9%), Positives = 35/144 (24%), Gaps = 4/144 (2%)

Query: 24  LQIRSKESVINKEFVTKVEELYEKAQKAHKKRDKVYGAYDKVSSHKKSPKELSKAFYIDF 83
           + I  K       +     + ++K +  +   D            ++   + +     + 
Sbjct: 206 VIILKKNRTNRDVYFIDASKEFDKGKNQNIXTDAHIEKILNAYKSREDIDKFAHLASFEE 265

Query: 84  RTELKYFKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEE 143
             E  Y   + +Y  +   E  E         + +I +   T+          + +L   
Sbjct: 266 IVENDYNLNIPRYVDTFEEEEVE----PLTEIVAKINQTNATIESQTASLLDXLGQLHGT 321

Query: 144 FIELGFDQCDECDLCSEKADVIQK 167
             E   +                 
Sbjct: 322 TPEADEELKAFVKAFKGLEHHHHH 345


>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics,
           riken structural genomics/proteomics initiative, RSGI,
           hydrolase; 2.25A {Pyrococcus horikoshii OT3} PDB: 2how_A
           (A:128-356)
          Length = 229

 Score = 26.8 bits (58), Expect = 2.0
 Identities = 5/33 (15%), Positives = 12/33 (36%)

Query: 111 KSAIEIEEITKAVDTLTRAYNEYKKEIRELIEE 143
           K   E++ +  A     + + E        ++E
Sbjct: 5   KDKEEVKMMEHASRIADKVFEEILTWDLIGMKE 37


>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics,
           PSI-2, protein structure initiative; 2.18A
           {Encephalitozoon cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A
           3fmq_A* 3fmr_A* (A:)
          Length = 360

 Score = 26.8 bits (57), Expect = 2.0
 Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 3/41 (7%)

Query: 99  SVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRE 139
           S   E+  F     +  +++  +A +   RA    +  +R 
Sbjct: 33  SRNMEIENF---TESDILQDARRAAEAHRRARYRVQSIVRP 70


>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} (A:)
          Length = 83

 Score = 26.7 bits (59), Expect = 2.1
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 93  LTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIE 142
            +  Y   VAE R   L ++  E E++ K ++         +KE ++L E
Sbjct: 17  PSSQYWKEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAE 66


>1o0x_A Methionine aminopeptidase; TM1478, structural genomics,
           JCSG, PSI, protein structure initiative, joint center
           for structural genomics; 1.90A {Thermotoga maritima}
           (A:)
          Length = 262

 Score = 26.6 bits (57), Expect = 2.2
 Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 3/42 (7%)

Query: 98  KSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRE 139
                 +      K+  EIE++ KA   +  A  E +K I  
Sbjct: 7   HHHHHHMIRI---KTPSEIEKMKKAGKAVAVALREVRKVIVP 45


>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET:
           M2C; 1.04A {Staphylococcus aureus} (A:)
          Length = 252

 Score = 26.6 bits (57), Expect = 2.4
 Identities = 4/33 (12%), Positives = 12/33 (36%)

Query: 111 KSAIEIEEITKAVDTLTRAYNEYKKEIRELIEE 143
           K+  E++ + +      +  N  +   +  I  
Sbjct: 4   KTEEELQALKEIGYICAKVRNTMQAATKPGITT 36


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 26.3 bits (58), Expect = 2.4
 Identities = 9/39 (23%), Positives = 11/39 (28%), Gaps = 13/39 (33%)

Query: 20 FGSFLQIRSKESVINKEFVTKVEELYE--KAQKAHKKRD 56
              + I S   V+   F       Y     Q A   RD
Sbjct: 2  LADVMSIESLVEVV---F-------YRGMTMQVA-VPRD 29


>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline-
           specific enzyme, aminopeptidase P, manganese enzyme,
           protease, manganese; HET: CSO; 1.56A {Escherichia coli}
           (A:176-440)
          Length = 265

 Score = 26.6 bits (57), Expect = 2.6
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 111 KSAIEIEEITKAVDTLTRAYNEYKKEIRELIEE 143
           KS  EI  + +A +    A+    ++ R  + E
Sbjct: 1   KSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFE 33


>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase,
           cytoplasm, transport, magnesium, PEP- utilising enzyme,
           phosphotransferase system; 2.40A {Staphylococcus aureus}
           PDB: 2hro_A (A:261-572)
          Length = 312

 Score = 26.5 bits (57), Expect = 2.7
 Identities = 5/35 (14%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 112 SAIEIEEITKAVDTLTRAYNEYKKEIRELIEEFIE 146
           + +   E+T+  +       +  +E+ EL+  +++
Sbjct: 280 NGLSKNEMTELANRAVDCATQ--EEVIELVNNYVK 312


>3iu7_A Methionine aminopeptidase; enzyme-inhibitor complex, cobalt,
           hydrolase, metal-binding, protease; HET: FCD; 1.40A
           {Mycobacterium tuberculosis} PDB: 3iu8_A* 3iu9_A* 1y1n_A
           1yj3_A (A:)
          Length = 288

 Score = 26.2 bits (56), Expect = 3.1
 Identities = 8/65 (12%), Positives = 16/65 (24%), Gaps = 13/65 (20%)

Query: 99  SVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIR----------ELIEEFIELG 148
           +           ++   IE++  A      A  E  K +              E  ++ G
Sbjct: 36  AQEGSEPWV---QTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDNG 92

Query: 149 FDQCD 153
                
Sbjct: 93  AYPST 97


>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate
           aminotransferase; HET: PGU; 1.67A {Thermus thermophilus
           HB27} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A*
           3cbf_A* (A:1-43,A:285-397)
          Length = 156

 Score = 26.0 bits (57), Expect = 3.3
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 109 LGKSAIEIEEITKAVDTLTRAYNEYKKEI 137
           L  + ++ E I + V  L RA       +
Sbjct: 128 LSYATLDREGIAEGVRRLGRALKGLLALV 156


>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease,
           pitabread fold; HET: GOL; 1.10A {Homo sapiens} PDB:
           2b3k_A 2b3l_A 2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A* (A:74-329)
          Length = 256

 Score = 26.2 bits (56), Expect = 3.3
 Identities = 4/33 (12%), Positives = 10/33 (30%)

Query: 111 KSAIEIEEITKAVDTLTRAYNEYKKEIRELIEE 143
            S+ +IE +           +     I+  +  
Sbjct: 3   LSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTT 35


>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
           manganese, metal-binding, metalloprotease, protease;
           2.30A {Alteromonas SP} (A:160-517)
          Length = 358

 Score = 26.1 bits (56), Expect = 3.4
 Identities = 4/33 (12%), Positives = 12/33 (36%)

Query: 111 KSAIEIEEITKAVDTLTRAYNEYKKEIRELIEE 143
           K+  E+  + +A     + +   +    +   E
Sbjct: 1   KTQYELACMREANKIAVQGHKAARDAFFQGKSE 33


>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, structural
           genomics, center for structural genomics of infectious
           diseases; HET: SO4; 2.89A {Bacillus anthracis}
           (A:172-427)
          Length = 256

 Score = 26.1 bits (56), Expect = 3.4
 Identities = 7/29 (24%), Positives = 11/29 (37%)

Query: 111 KSAIEIEEITKAVDTLTRAYNEYKKEIRE 139
           K+  EIE I +A+           K  + 
Sbjct: 1   KTDEEIEIIKEAIAVTKDGIYNVLKHAKA 29


>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase,
           siroheme, [4Fe-4S], snirr, six-electron reduction,
           phosphate complex; HET: SRM; 1.60A {Escherichia coli}
           (A:352-497)
          Length = 146

 Score = 25.9 bits (56), Expect = 3.7
 Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 114 IEIEEITKAVDTLTRAYNEYKKEIRELIEEFIE-LGFD 150
           I   EI  ++D L   + + ++   E   +F    G  
Sbjct: 98  ITEPEILASLDELIGRWAKEREA-GEGFGDFTVRAGII 134


>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease
           mutation, acetylation, peptidase D, polymorphism,
           collagen degradation, metalloaminopeptidase; 1.82A {Homo
           sapiens} PDB: 2okn_A (A:188-494)
          Length = 307

 Score = 25.8 bits (55), Expect = 3.8
 Identities = 7/34 (20%), Positives = 18/34 (52%)

Query: 111 KSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEF 144
           K+ +E+E +       + A+ E  K ++  ++E+
Sbjct: 1   KTDMELEVLRYTNKISSEAHREVMKAVKVGMKEY 34


>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor,
           antibacterial, hydrolase; HET: U12; 1.00A {Escherichia
           coli K12} (A:)
          Length = 263

 Score = 25.4 bits (54), Expect = 4.4
 Identities = 4/33 (12%), Positives = 12/33 (36%)

Query: 111 KSAIEIEEITKAVDTLTRAYNEYKKEIRELIEE 143
           K+  +IE++  A           +  ++  +  
Sbjct: 5   KTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVST 37


>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas
           putida} (A:158-401)
          Length = 244

 Score = 25.7 bits (55), Expect = 4.5
 Identities = 6/33 (18%), Positives = 10/33 (30%)

Query: 111 KSAIEIEEITKAVDTLTRAYNEYKKEIRELIEE 143
           KSA E   I               + + + + E
Sbjct: 1   KSAEEHVMIRHGARIADIGGAAVVEALGDQVPE 33


>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural
           genomics, PSI, protein structure initiative; 1.90A
           {Bacillus subtilis} (A:)
          Length = 80

 Score = 25.4 bits (55), Expect = 4.5
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 80  YIDFRTELKYFKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKE 136
           +I+         A   YY+SVV+ L +  L K+A+    + K +  L  AYN+ K+ 
Sbjct: 17  HIEXNQSEDKIHAXNSYYRSVVSTLVQDQLTKNAV----VLKRIQHLDEAYNKVKRG 69


>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo
           sapiens} (A:)
          Length = 83

 Score = 25.2 bits (55), Expect = 5.6
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 94  TKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIE 142
           +  Y   VAE R   L ++  E E++ K ++         KKE +EL E
Sbjct: 26  SSQYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 74


>3de8_A Soluble cytochrome B562; Cu-stabilized dimeric
           superstructure, electron transport, heme, iron,
           metal-binding, periplasm, transport; HET: HEM; 1.72A
           {Escherichia coli} PDB: 2qla_A* 3de9_A* 3c62_A* 3c63_A*
           2bc5_A* 1qq3_A* 1apc_A 1qpu_A* 256b_A* 3foo_A* 3fop_A*
           1lm3_B* 1m6t_A 1yyj_A 1yyx_A 1yza_A 1yzc_A (A:)
          Length = 106

 Score = 25.1 bits (55), Expect = 5.7
 Identities = 6/49 (12%), Positives = 17/49 (34%)

Query: 105 REFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEFIELGFDQCD 153
               + + A    ++  A+  +  A  + +K     +E+      +  D
Sbjct: 12  DNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMHD 60


>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4,
           methionine aminopeptidase, PITA-bread, transcription;
           1.60A {Homo sapiens} PDB: 2v6c_A (A:1-245,A:313-401)
          Length = 334

 Score = 25.2 bits (54), Expect = 6.2
 Identities = 2/41 (4%), Positives = 8/41 (19%), Gaps = 3/41 (7%)

Query: 99  SVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRE 139
               + +        + + +     D   R      +    
Sbjct: 11  EDEQQEQTI---AEDLVVTKYKMGGDIANRVLRSLVEASSS 48


>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4;
           1.60A {Homo sapiens} (A:1-375,A:446-478)
          Length = 408

 Score = 25.0 bits (53), Expect = 6.4
 Identities = 14/128 (10%), Positives = 32/128 (25%)

Query: 18  AKFGSFLQIRSKESVINKEFVTKVEELYEKAQKAHKKRDKVYGAYDKVSSHKKSPKELSK 77
           A+      +  KE   + E      +     +K  KK+ +         S        + 
Sbjct: 68  ARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDPPSVPICDLYPNG 127

Query: 78  AFYIDFRTELKYFKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEI 137
            F      E    +          +E ++     S     +  +A +   +        I
Sbjct: 128 VFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFREAAEAHRQVRKYVMSWI 187

Query: 138 RELIEEFI 145
           +  +    
Sbjct: 188 KPGMTMIE 195


>2zyo_A Solute-binding protein; open form, sugar binding protein;
          HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB:
          2zyk_A* 2zym_A* 2zyn_A* 2dfz_A* (A:130-173,A:226-271)
          Length = 90

 Score = 25.0 bits (55), Expect = 6.7
 Identities = 9/31 (29%), Positives = 19/31 (61%), Gaps = 4/31 (12%)

Query: 34 NKEFVTKV----EELYEKAQKAHKKRDKVYG 60
          NK+ + +V    +EL++ A+  +K  ++ YG
Sbjct: 7  NKKLMGQVPATYDELFQYAKANNKPDEQKYG 37


>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate,
           rossmann fold, crystallography, X-RAY, P. horikoshii,
           aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
           horikoshii} (A:)
          Length = 392

 Score = 24.9 bits (53), Expect = 7.0
 Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 11/117 (9%)

Query: 67  SHKKSPKELSKAFYIDFRTELKYFKALTKY-YKSVVAELREFGLGKSAIEIEEITKAVDT 125
           S +   K++ K      R  LK  +       K VV +  E    +   +++E   A   
Sbjct: 268 SPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKN 327

Query: 126 LTRAYNEYKKEIRELIEEFIELGFDQCDECDLCSEKADVIQKKRIAFEMVEREFAEK 182
                 E K+ +   I+EF                +    +K    F+   +   E 
Sbjct: 328 GELTCGECKRYLISKIQEF----------LKEHQRRRKKAEKLVEKFKYTGKLAQEM 374


>2asy_A Protein YDHR precursor; dimeric APHA+beta barrel, homodimer,
           structural genomics, ontario centre for structural
           proteomics, OCSP; NMR {Escherichia coli} (A:)
          Length = 123

 Score = 24.4 bits (53), Expect = 9.1
 Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 83  FRTELKYFKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAY 130
           F  E    K+   Y +   A L+  G+ +   ++ ++ + +  + +A 
Sbjct: 78  FTDE----KSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAK 121


>1gv3_A Manganese superoxide dismutase; anabaena PCC 7120,; 2.0A
           {Anabaena SP} (A:129-248)
          Length = 120

 Score = 24.5 bits (53), Expect = 9.3
 Identities = 2/29 (6%), Positives = 12/29 (41%), Gaps = 3/29 (10%)

Query: 31  SVINKEFVTKVEELYEKAQKAHKKRDKVY 59
           +V+N   +       + +++++      +
Sbjct: 95  NVVNWSEI---NRRTQASRQSNSHHHHHH 120


>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity
           clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase;
           HET: ATG ADP; 2.85A {Saccharomyces cerevisiae}
           (A:395-516)
          Length = 122

 Score = 24.3 bits (53), Expect = 9.4
 Identities = 6/20 (30%), Positives = 7/20 (35%), Gaps = 5/20 (25%)

Query: 117 EEITKAVDT-----LTRAYN 131
             I K +        TR YN
Sbjct: 93  TAIIKKIPATVKSGFTRKYN 112


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.315    0.132    0.356 

Gapped
Lambda     K      H
   0.267   0.0390    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,372,821
Number of extensions: 63193
Number of successful extensions: 428
Number of sequences better than 10.0: 1
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 92
Length of query: 190
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 106
Effective length of database: 2,116,429
Effective search space: 224341474
Effective search space used: 224341474
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 52 (24.7 bits)