RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781072|ref|YP_003065485.1| hypothetical protein
CLIBASIA_04870 [Candidatus Liberibacter asiaticus str. psy62]
         (190 letters)



>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
           GABA-aminotransferase {Escherichia coli [TaxId: 562]}
          Length = 425

 Score = 30.6 bits (68), Expect = 0.082
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 15/72 (20%)

Query: 79  FYIDFRTELKYFKALTKYYKSVVAELREFGL-----GKS----------AIEIEEITKAV 123
             I+   +  + K   K    +VA  R+ GL     G             IE  +I + +
Sbjct: 354 IAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGL 413

Query: 124 DTLTRAYNEYKK 135
           + +++ ++E K+
Sbjct: 414 EIISQCFDEAKQ 425


>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 306

 Score = 29.6 bits (65), Expect = 0.18
 Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 3/106 (2%)

Query: 44  LYEKAQKAHKKRDKVYGAYDKVSSHKKSPKELSKAFYIDFRTELKYFKALTKY---YKSV 100
           +        K             S ++   ++ KA+      E      + KY   Y   
Sbjct: 195 VLTGLDGEGKMSSSKGNFIAVDDSPEEIRAKIKKAYCPAGVVEGNPIMEIAKYFLEYPLT 254

Query: 101 VAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEFIE 146
           +    +FG   +    EE+            + K  + E + + +E
Sbjct: 255 IKRPEKFGGDLTVNSYEELESLFKNKELHPMDLKNAVAEELIKILE 300


>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 420

 Score = 27.8 bits (60), Expect = 0.69
 Identities = 8/28 (28%), Positives = 11/28 (39%)

Query: 109 LGKSAIEIEEITKAVDTLTRAYNEYKKE 136
           L       E+I + +  L     EY KE
Sbjct: 389 LSFCLPPDEKIVEGIKRLREVVLEYGKE 416


>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase,
           PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}
          Length = 447

 Score = 27.2 bits (60), Expect = 0.80
 Identities = 11/47 (23%), Positives = 20/47 (42%)

Query: 13  SKIPDAKFGSFLQIRSKESVINKEFVTKVEELYEKAQKAHKKRDKVY 59
           SK PD     FL  +++ +V+++ F    + L  +       R K  
Sbjct: 332 SKAPDGSVEEFLMAQNRFAVLDRSFPEDAKRLRAQVAHELDVRFKEL 378


>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
           domain {Pseudomonas putida [TaxId: 303]}
          Length = 246

 Score = 27.0 bits (58), Expect = 1.1
 Identities = 6/33 (18%), Positives = 10/33 (30%)

Query: 111 KSAIEIEEITKAVDTLTRAYNEYKKEIRELIEE 143
           KSA E   I               + + + + E
Sbjct: 3   KSAEEHVMIRHGARIADIGGAAVVEALGDQVPE 35


>d1rhca_ c.1.16.3 (A:) Coenzyme F420 dependent secondary alcohol
           dehydrogenase {Archaeon Methanoculleus thermophilicus
           [TaxId: 2200]}
          Length = 330

 Score = 26.6 bits (57), Expect = 1.5
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 136 EIRELIEEFIELGFDQ 151
           E+ + IE F E G + 
Sbjct: 289 EMIKEIERFKEAGINH 304


>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
           dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
           subunit {Moorella thermoacetica [TaxId: 1525]}
          Length = 729

 Score = 26.6 bits (59), Expect = 1.6
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 6/33 (18%)

Query: 31  SVINKEFVT------KVEELYEKAQKAHKKRDK 57
           +++++  VT      KV+E  E A++ +K+RD 
Sbjct: 458 AIVDRVQVTIFTDEAKVKEYMEVAREKYKERDD 490


>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
           {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 221

 Score = 26.5 bits (57), Expect = 1.7
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 111 KSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEF 144
           K+  EIE I KA +   +A     +EI E   E 
Sbjct: 1   KTKEEIEIIEKACEIADKAVMAAIEEITEGKRER 34


>d1ug6a_ c.1.8.4 (A:) Beta-glucosidase A {Thermus thermophilus
           [TaxId: 274]}
          Length = 426

 Score = 26.3 bits (57), Expect = 1.7
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 79  FYIDFRTELKYFKALTKYYKSVVA 102
           +Y+DF ++ +  K    +Y+  +A
Sbjct: 401 YYVDFPSQRRIPKRSALWYRERIA 424


>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 339

 Score = 26.4 bits (57), Expect = 1.7
 Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 2/112 (1%)

Query: 37  FVTKVEELYEKAQKAHKKRDKVYGAYDKVSSHKKSPKELSKAFYIDFRTELKYFKALTKY 96
               V  L      + ++  K+     K    KK  K   +   ++    L + K +   
Sbjct: 208 MNPMVPGLTGSKMSSSEEESKIDLLDRKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFP 267

Query: 97  YKSVVAELR--EFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEFIE 146
            KS    LR  ++G  K+     ++ K          + K  +   + + ++
Sbjct: 268 LKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLD 319


>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 249

 Score = 25.9 bits (55), Expect = 2.2
 Identities = 4/33 (12%), Positives = 12/33 (36%)

Query: 111 KSAIEIEEITKAVDTLTRAYNEYKKEIRELIEE 143
           K+  E++ + +      +  N  +   +  I  
Sbjct: 4   KTEEELQALKEIGYICAKVRNTMQAATKPGITT 36


>d1f07a_ c.1.16.3 (A:) Coenzyme F420 dependent
           tetrahydromethanopterin reductase {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 321

 Score = 25.8 bits (55), Expect = 2.3
 Identities = 6/16 (37%), Positives = 7/16 (43%)

Query: 136 EIRELIEEFIELGFDQ 151
           E    IE   E+G  Q
Sbjct: 281 EFIPKIEALGEMGVTQ 296


>d1e4ia_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus polymyxa [TaxId:
           1406]}
          Length = 447

 Score = 25.9 bits (56), Expect = 2.4
 Identities = 8/24 (33%), Positives = 17/24 (70%)

Query: 79  FYIDFRTELKYFKALTKYYKSVVA 102
            ++DFRT+++  K    +Y++VV+
Sbjct: 416 IHVDFRTQVRTPKQSYYWYRNVVS 439


>d2gsva1 a.23.7.1 (A:3-69) Hypothetical protein YvfG {Bacillus
           subtilis [TaxId: 1423]}
          Length = 67

 Score = 25.8 bits (56), Expect = 2.5
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 80  YIDFRTELKYFKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKE 136
           +I+         A+  YY+SVV+ L +  L K+A+    + K +  L  AYN+ K+ 
Sbjct: 15  HIEMNQSEDKIHAMNSYYRSVVSTLVQDQLTKNAV----VLKRIQHLDEAYNKVKRG 67


>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
           maritima [TaxId: 2336]}
          Length = 249

 Score = 25.7 bits (55), Expect = 2.6
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 111 KSAIEIEEITKAVDTLTRAYNEYKKEIRELIEE 143
           K+  EIE++ KA   +  A  E +K I      
Sbjct: 5   KTPSEIEKMKKAGKAVAVALREVRKVIVPGKTA 37


>d1vffa1 c.1.8.4 (A:1-423) Beta-glucosidase A {Archaeon Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 423

 Score = 24.4 bits (52), Expect = 6.0
 Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 7/38 (18%)

Query: 79  FYIDFRTELKYFKALTKYYKSVVAE-------LREFGL 109
             +D++T  +  +     Y  +          L+ +GL
Sbjct: 381 VEVDYQTFERRPRKSAYVYGEIARSKEIKDELLKRYGL 418


>d2j78a1 c.1.8.4 (A:3-445) Beta-glucosidase A {Thermotoga maritima
           [TaxId: 2336]}
          Length = 443

 Score = 24.4 bits (52), Expect = 6.1
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 79  FYIDFRTELKYFKALTKYYKSVVA 102
            Y+D+ T+ +  K    +Y +VV 
Sbjct: 415 VYVDYSTQKRIVKDSGYWYSNVVK 438


>d1uwsa_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 489

 Score = 24.5 bits (52), Expect = 6.4
 Identities = 4/24 (16%), Positives = 11/24 (45%)

Query: 79  FYIDFRTELKYFKALTKYYKSVVA 102
             +D+ T+  Y++     Y+ +  
Sbjct: 444 LKVDYNTKRLYWRPSALVYREIAT 467


>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
           coli [TaxId: 562]}
          Length = 262

 Score = 24.5 bits (52), Expect = 6.6
 Identities = 4/33 (12%), Positives = 12/33 (36%)

Query: 111 KSAIEIEEITKAVDTLTRAYNEYKKEIRELIEE 143
           K+  +IE++  A           +  ++  +  
Sbjct: 4   KTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVST 36


>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain
           {Thermotoga maritima [TaxId: 2336]}
          Length = 281

 Score = 24.3 bits (53), Expect = 6.8
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 122 AVDTLTRAYNEYKKEIRELIEEFIEL-GFDQCDEC 155
            V  L R ++EY+KE   L+E+ + L  +D   +C
Sbjct: 205 NVGLLFRHFDEYEKEFYRLVEKNLYLPAYDYILKC 239


>d1gnxa_ c.1.8.4 (A:) Beta-glucosidase A {Streptomyces sp. [TaxId:
           1931]}
          Length = 464

 Score = 24.4 bits (52), Expect = 7.3
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 79  FYIDFRTELKYFKALTKYYKSVVA 102
            Y+D+ T  +  KA  ++Y  V  
Sbjct: 435 VYVDYPTGTRIPKASARWYAEVAR 458


>d1pbga_ c.1.8.4 (A:) 6-phospho-beta-D-galactosidase, PGAL
           {Lactococcus lactis [TaxId: 1358]}
          Length = 468

 Score = 24.0 bits (51), Expect = 8.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 79  FYIDFRTELKYFKALTKYYKSVVA 102
           FY+DF T+ +Y K    +YK +  
Sbjct: 440 FYVDFDTQERYPKKSAHWYKKLAE 463


>d1qoxa_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus circulans, subsp.
           alkalophilus [TaxId: 1397]}
          Length = 449

 Score = 24.0 bits (51), Expect = 8.2
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 79  FYIDFRTELKYFKALTKYYKSVVA 102
            ++D+ T ++  K    +YK V++
Sbjct: 420 VHVDYDTLVRTPKDSFYWYKGVIS 443


>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 268

 Score = 23.9 bits (51), Expect = 8.2
 Identities = 10/124 (8%), Positives = 33/124 (26%), Gaps = 3/124 (2%)

Query: 26  IRSKESVINKEFVTKVEELYEKAQKAHKKRDKVYGAYDKVSSHKKSPKELSKAFYIDFRT 85
                  +        E   ++     +        +D   +      +  +   + +  
Sbjct: 99  STQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEV 158

Query: 86  ELKYFKALTKYYKS---VVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIE 142
               + +  K +++       L      K    +E +   +      +    + + E +E
Sbjct: 159 TEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLE 218

Query: 143 EFIE 146
           EF+ 
Sbjct: 219 EFLA 222


>d1qvba_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Thermosphaera
           aggregans [TaxId: 54254]}
          Length = 481

 Score = 24.0 bits (51), Expect = 9.1
 Identities = 4/25 (16%), Positives = 12/25 (48%)

Query: 79  FYIDFRTELKYFKALTKYYKSVVAE 103
             +DF+T+ +Y +     ++ +   
Sbjct: 443 VMVDFKTKKRYLRPSALVFREIATH 467


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.356 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 697,808
Number of extensions: 33802
Number of successful extensions: 264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 58
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 50 (23.2 bits)