Query gi|254781073|ref|YP_003065486.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 307
No_of_seqs 154 out of 1016
Neff 5.0
Searched_HMMs 23785
Date Wed Jun 1 00:19:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781073.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vju_A Coproporphyrinogen III 100.0 0 0 922.2 21.1 274 10-307 5-284 (309)
2 2aex_A Coproporphyrinogen III 100.0 0 0 908.7 22.7 267 17-307 40-320 (346)
3 1txn_A Coproporphyrinogen III 100.0 0 0 904.5 18.3 273 10-307 6-302 (328)
4 3en9_A Glycoprotease, O-sialog 61.6 2.6 0.00011 21.1 1.5 35 235-274 505-540 (540)
5 1ci4_A Protein (barrier-TO-aut 55.0 7.9 0.00033 18.1 3.0 32 167-198 54-88 (89)
6 1bea_A Bifunctional amylase/se 28.0 14 0.00058 16.5 0.7 25 126-155 101-125 (127)
7 3kdr_A HK97 family phage porta 21.4 37 0.0016 13.7 2.2 43 226-278 246-289 (310)
8 2zhn_A Galectin-9; beta sandwi 21.1 25 0.0011 14.8 0.9 15 126-141 53-67 (148)
9 2r7r_A RNA-dependent RNA polym 19.1 18 0.00074 15.8 -0.2 51 22-93 645-697 (1095)
10 2fma_A Amyloid beta A4 protein 17.8 35 0.0015 13.9 1.0 14 167-180 15-28 (59)
No 1
>1vju_A Coproporphyrinogen III oxidase; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.40A {Leishmania major} SCOP: d.248.1.1 PDB: 2qt8_A* 3dwr_A 3dws_A* 3ejo_A 3e8j_A*
Probab=100.00 E-value=0 Score=922.23 Aligned_cols=274 Identities=38% Similarity=0.739 Sum_probs=262.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEE
Q ss_conf 68766999999999999999999999999630102222344566512521231788888777504899505946536887
Q gi|254781073|r 10 CPDDIEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDLGGGRMATLCAGKVFEKAAV 89 (307)
Q Consensus 10 ~p~~ie~kk~~~~~wF~~LQd~Ic~~fE~lE~~~~~~~~~~~~~~F~~d~W~R~~g~~~~~GGG~s~VL~~G~VFEKaGV 89 (307)
.-.+|..+.+.+++||++||++||++||++|++ ++|++|.|+|++| |||+||||++|+|||||||
T Consensus 5 ~~~~m~~~ie~Vk~~F~~LQ~~Ic~~lE~ldg~----------~~F~~d~W~R~~g-----GGG~t~Vl~~G~VfEKaGV 69 (309)
T 1vju_A 5 HHHHMSLAVEAVKDFLLKLQDDICEALEAEDGQ----------ATFVEDKWTREGG-----GGGRTRVMVDGAVIEKGGV 69 (309)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------CCCEEEEEEETTT-----EEEEEEEEESCSSEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC----------CCEEECCCCCCCC-----CCCCEEEEECCEEEEECCE
T ss_conf 200043659999999999999999999964087----------8733545547875-----5541489866736750667
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCCCCEEECEEEEEECCCCCCCHHHCCHHHEEEC------CCCCCCCCCCCCCCCHHHC
Q ss_conf 7763003542677642111026765100000223313688744010230210202------4312532001100000110
Q gi|254781073|r 90 LVSTVYGDLSPDFKDQILGTTKNPYFWATGLSVIVHPYNPHVPAVHFNIRMIVTG------AYWFGGGIDLTPSLESRRH 163 (307)
Q Consensus 90 NfS~V~G~~~p~~a~~i~g~~~~~~F~AtGiS~V~Hp~nP~vPt~H~N~R~f~~~------~~WFGGG~DLTP~~~~~~y 163 (307)
|||+|+|+++|+++.++++..++.+|||||||||+||+||+|||+|||+|||+|. .||||||+||||| |
T Consensus 70 N~S~V~G~~lp~~a~~~~~~~~~~~f~A~GiSlV~HP~NP~vPt~H~N~R~f~~~~~~~~~~wWFGGG~DLTP~-----y 144 (309)
T 1vju_A 70 NFSHVYGKGLPMSSTERHPDIAGCNFEAMGVSLVIHPKNPHVPTSHANVRLFVAEREGKEPVWWFGGGFDLTPY-----Y 144 (309)
T ss_dssp EEEEEEEEC-----------CTTCEEEEEEEEEEEEESSTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECS-----S
T ss_pred EEEEEECCCCCHHHHHCCCCCCCCCCEEECCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCHHH-----H
T ss_conf 79999666674234431654468751330243200368998862222469999825898653377134342054-----5
Q ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 43267999999998403656733428999976787434532521234301010147866658967799999999999999
Q gi|254781073|r 164 SYDPDVIFFHNTLKEMCSQHAVANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVGDCFIK 243 (307)
Q Consensus 164 ~~~eD~~~fH~~~k~~Cd~~~~~~Y~~fKk~CD~YFylpHR~E~RGvGGIFFD~l~~~~~~~~~e~~f~f~~~vg~~fl~ 243 (307)
+++||+++||++||++||+|+++||++||||||+|||||||+|+|||||||||||++ ++++++|+|+++||++|++
T Consensus 145 ~~~eD~~~fH~~lK~~Cd~~~~~~Y~~fKk~CD~YFylpHR~E~RGiGGIFfD~l~~----~~~~~~f~f~~~vg~~fl~ 220 (309)
T 1vju_A 145 AVEEDCRDFHQVAQDLCKPFGADVYARFKGWCDEYFFIPYRNEARGIGGLFFDDLNE----WPFEKCFEFVQAVGKGYMD 220 (309)
T ss_dssp CCHHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHSEEGGGTEESSSEEEEEEEECS----SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCC----CCHHHHHHHHHHHHHHHHH
T ss_conf 308899999999998750123777799999867862030136676741566131147----9888879999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHEEECCCCCCCCC
Q ss_conf 9999998754799998999885420240112211110255357357888111411288878897
Q gi|254781073|r 244 LYPSLVRRNYHHLFSEQDRQEQLIRRGRYAEFNLLYDKGTNFGFKTGGNVESILASMPPLVAWP 307 (307)
Q Consensus 244 ~y~~Iv~~r~~~~~~~~~k~~Ql~rRgRYvEFNL~yDRGT~FGL~t~gr~esIl~SlPp~~~Wp 307 (307)
+|+|||+||++++||++||+|||+||||||||||||||||+|||+||||||||||||||+|+|.
T Consensus 221 ~Y~~Iv~~r~~~~~t~~~k~~Ql~rRGRYvEFNL~yDRGT~FGL~tggr~esILmSlPp~a~W~ 284 (309)
T 1vju_A 221 AYIPIVNRRKNTPYTEQQVEFQEFRRGRYAEFNLVIDRGTKFGLQSGGRTESILISLPPRARWG 284 (309)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTTCCHHHHGGGSCSCCCCC
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCHHHHEECCCCCCCCC
T ss_conf 8899999853799998899999972871489998777685002547995221012599768525
No 2
>2aex_A Coproporphyrinogen III oxidase, mitochondrial; FLAT beta-sheet sandwiched by helices, oxidoreductase; HET: CIT; 1.58A {Homo sapiens}
Probab=100.00 E-value=0 Score=908.67 Aligned_cols=267 Identities=42% Similarity=0.784 Sum_probs=254.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEEEEEEC
Q ss_conf 99999999999999999999996301022223445665125212317888887775048995059465368877763003
Q gi|254781073|r 17 RKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDLGGGRMATLCAGKVFEKAAVLVSTVYG 96 (307)
Q Consensus 17 kk~~~~~wF~~LQd~Ic~~fE~lE~~~~~~~~~~~~~~F~~d~W~R~~g~~~~~GGG~s~VL~~G~VFEKaGVNfS~V~G 96 (307)
.+.+++.+++.||++||++||+||++ ++|++|.|+|++| |||+||||++|+||||||||||+|+|
T Consensus 40 mr~r~e~~i~~lQ~~Ic~~lE~ldg~----------~~F~~d~W~R~~G-----GGG~s~vl~~G~VfEKaGVN~S~V~G 104 (346)
T 2aex_A 40 MKTKMELLILETQAQVCQALAQVDGG----------ANFSVDRWERKEG-----GGGISCVLQDGCVFEKAGVSISVVHG 104 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTT----------CCCEEEEEEETTT-----EEEEEEEEESCSSEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC----------CCEEECCCCCCCC-----CCCEEEEEECCCEEEEEEEEEEEEEE
T ss_conf 99999999999999999999987389----------9715456726899-----88428998489288851079999874
Q ss_pred CCHHHHHHHHHHCCC-------CCCCEEECEEEEEECCCCCCCHHHCCHHHEEEC------CCCCCCCCCCCCCCCHHHC
Q ss_conf 542677642111026-------765100000223313688744010230210202------4312532001100000110
Q gi|254781073|r 97 DLSPDFKDQILGTTK-------NPYFWATGLSVIVHPYNPHVPAVHFNIRMIVTG------AYWFGGGIDLTPSLESRRH 163 (307)
Q Consensus 97 ~~~p~~a~~i~g~~~-------~~~F~AtGiS~V~Hp~nP~vPt~H~N~R~f~~~------~~WFGGG~DLTP~~~~~~y 163 (307)
+++|+++.++++..+ +.+|||||||||+||+||+|||+|||+|||+|. .||||||+||||| |
T Consensus 105 ~~~p~~a~~~~~~~~~~~~~~~~~~F~A~GiSlViHP~NP~vPT~H~N~Ryfe~~~~~~~~~wWFGGG~DLTP~-----y 179 (346)
T 2aex_A 105 NLSEEAAKQMRSRGKVLKTKDGKLPFCAMGVSSVIHPKNPHAPTIHFNYRYFEVEEADGNKQWWFGGGCDLTPT-----Y 179 (346)
T ss_dssp ECCHHHHHHHHHTTCCCCCBTTBCEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECSTTCEEEEEEEEEEEECS-----S
T ss_pred ECCHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEECEEEEEEEECCCCCCCEEECCCCCCCCC-----C
T ss_conf 17999997411134577543468852775214664226888853001013899965888732366365356766-----5
Q ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 43267999999998403656733428999976787434532521234301010147866658967799999999999999
Q gi|254781073|r 164 SYDPDVIFFHNTLKEMCSQHAVANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVGDCFIK 243 (307)
Q Consensus 164 ~~~eD~~~fH~~~k~~Cd~~~~~~Y~~fKk~CD~YFylpHR~E~RGvGGIFFD~l~~~~~~~~~e~~f~f~~~vg~~fl~ 243 (307)
+++||++|||++||++||+|+++||++||||||+|||||||+|+|||||||||||++ ++++++|+|+++||++|++
T Consensus 180 ~~~eD~~~FH~~lK~aCD~~~~~~Y~~fKk~CD~YFyipHR~E~RGiGGIFFD~l~~----~~~~~~f~Fv~~vg~~fl~ 255 (346)
T 2aex_A 180 LNQEDAVHFHRTLKEACDQHGPDLYPKFKKWCDDYFFIAHRGERRGIGGIFFDDLDS----PSKEEVFRFVQSCARAVVP 255 (346)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTEEGGGTEESSSEEEEEEEECC----SCHHHHHHHHHHHHHTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC----CCHHHHHHHHHHHHHHHHH
T ss_conf 868999999999999987449666699986755988777651667652354022466----4200338999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCC-CCCHHHEEECCCCCCCCC
Q ss_conf 9999998754799998999885420240112211110255357357-888111411288878897
Q gi|254781073|r 244 LYPSLVRRNYHHLFSEQDRQEQLIRRGRYAEFNLLYDKGTNFGFKT-GGNVESILASMPPLVAWP 307 (307)
Q Consensus 244 ~y~~Iv~~r~~~~~~~~~k~~Ql~rRgRYvEFNL~yDRGT~FGL~t-~gr~esIl~SlPp~~~Wp 307 (307)
+|+|||+||++.+||++||+|||+||||||||||||||||+|||+| |||||||||||||+|+|.
T Consensus 256 ~Y~~Iv~kr~~~~~t~~~r~~Ql~RRGRYvEFNLlyDRGT~FGL~t~Ggr~EsILmSLPp~a~W~ 320 (346)
T 2aex_A 256 SYIPLVKKHCDDSFTPQEKLWQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMSLPLTARWE 320 (346)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCCCCTTGGGSSSCCHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEEEEEEECCCHHCCCCCCCCHHEEEECCCCCCEEC
T ss_conf 99999998607999889999998628766899856556850216679988421565489878023
No 3
>1txn_A Coproporphyrinogen III oxidase; structural genomics, dimer, novel fold, PSI, protein structure initiative; 1.70A {Saccharomyces cerevisiae} SCOP: d.248.1.1 PDB: 1tkl_A 1tlb_A 1tk1_A
Probab=100.00 E-value=0 Score=904.47 Aligned_cols=273 Identities=40% Similarity=0.757 Sum_probs=255.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEE
Q ss_conf 68766999999999999999999999999630102222344566512521231788888777504899505946536887
Q gi|254781073|r 10 CPDDIEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDLGGGRMATLCAGKVFEKAAV 89 (307)
Q Consensus 10 ~p~~ie~kk~~~~~wF~~LQd~Ic~~fE~lE~~~~~~~~~~~~~~F~~d~W~R~~g~~~~~GGG~s~VL~~G~VFEKaGV 89 (307)
.|.++.++ +.+++||++||++||++||++|+. +|++|.|+|+++ +|||+||||++|+|||||||
T Consensus 6 ~p~~~~~r-~~~e~~~~~lQ~~Ic~~lE~ld~~-----------~F~~d~W~R~~~----gGGG~s~vl~~G~VfEKaGV 69 (328)
T 1txn_A 6 DPRNLPIR-QQMEALIRRKQAEITQGLESIDTV-----------KFHADTWTRGND----GGGGTSMVIQDGTTFEKGGV 69 (328)
T ss_dssp CCTTSCHH-HHHHHHHHHHHHHHHHHHHTTSSS-----------CCEECCCCCSCC----CSSSCEEEEESCSSEEEEEE
T ss_pred CCCCCCHH-HHHHHHHHHHHHHHHHHHHHHCCC-----------CEEEECCCCCCC----CCCCEEEEECCCCEEEEEEE
T ss_conf 97654489-999999999999999999965079-----------607566622799----98966999739948886137
Q ss_pred EEEEEECCCHHHHHHHHHHCCC----------------CCCCEEECEEEEEECCCCCCCHHHCCHHHEEEC-------CC
Q ss_conf 7763003542677642111026----------------765100000223313688744010230210202-------43
Q gi|254781073|r 90 LVSTVYGDLSPDFKDQILGTTK----------------NPYFWATGLSVIVHPYNPHVPAVHFNIRMIVTG-------AY 146 (307)
Q Consensus 90 NfS~V~G~~~p~~a~~i~g~~~----------------~~~F~AtGiS~V~Hp~nP~vPt~H~N~R~f~~~-------~~ 146 (307)
|||+|+|+++|+++.++++..+ +.+|||||||||+||+||+|||+|||+|||+|. .|
T Consensus 70 N~S~V~G~~~p~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~f~AtGiSlViHP~NP~vPT~H~N~R~f~~~~~~~~~~~w 149 (328)
T 1txn_A 70 NVSVVYGQLSPAAVSAMKADHKNLRLPEDPKTGLPVTDGVKFFACGLSMVIHPVNPHAPTTHLNYRYFETWNQDGTPQTW 149 (328)
T ss_dssp EEEEEEEEECHHHHHTTGGGCTTCCCC----------CCEEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECTTSSEEEE
T ss_pred EEEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCCCCCCCCCEEEEEEEECCCCCCCCE
T ss_conf 99999963798999850312245567642223675335774066212011115899976000002589974578875540
Q ss_pred CCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHCCCCCCCCCC
Q ss_conf 12532001100000110432679999999984036567334289999767874345325212343010101478666589
Q gi|254781073|r 147 WFGGGIDLTPSLESRRHSYDPDVIFFHNTLKEMCSQHAVANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGG 226 (307)
Q Consensus 147 WFGGG~DLTP~~~~~~y~~~eD~~~fH~~~k~~Cd~~~~~~Y~~fKk~CD~YFylpHR~E~RGvGGIFFD~l~~~~~~~~ 226 (307)
|||||+||||| |+++||++|||++||++||+|+++||++||||||+|||||||+|+|||||||||||++ .+
T Consensus 150 WFGGG~DLTP~-----y~~~eD~~~fH~~~K~~Cd~~~~~~Y~~fKk~CD~YFyipHR~E~RGiGGIFfD~l~~----~~ 220 (328)
T 1txn_A 150 WFGGGADLTPS-----YLYEEDGQLFHQLHKDALDKHDTALYPRFKKWCDEYFYITHRKETRGIGGIFFDDYDE----RD 220 (328)
T ss_dssp EEEEEEEEECS-----SCCHHHHHHHHHHHHHHHHTTCTTHHHHHEECGGGGGGGGTCCCCCCCEEEEEEEECS----SC
T ss_pred EECCCCCCCCC-----CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEECCCCCCCCCCCEEEECCCCC----CC
T ss_conf 54265234201-----3316888999999987531369688899998655626421025676653355211036----75
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCC-CCCHHHEEECCCCCCC
Q ss_conf 677999999999999999999998754799998999885420240112211110255357357-8881114112888788
Q gi|254781073|r 227 IDADFSFISAVGDCFIKLYPSLVRRNYHHLFSEQDRQEQLIRRGRYAEFNLLYDKGTNFGFKT-GGNVESILASMPPLVA 305 (307)
Q Consensus 227 ~e~~f~f~~~vg~~fl~~y~~Iv~~r~~~~~~~~~k~~Ql~rRgRYvEFNL~yDRGT~FGL~t-~gr~esIl~SlPp~~~ 305 (307)
+|++|+|+++||++||++|+|||++|++++||++||+|||+||||||||||||||||+|||+| |||||||||||||+|+
T Consensus 221 ~e~~f~f~~~~g~~fl~~Y~~Iv~~r~~~~~t~~~k~~Ql~rRGRYvEFNLlyDRGT~FGL~t~Ggr~esILmSlPp~a~ 300 (328)
T 1txn_A 221 PQEILKMVEDCFDAFLPSYLTIVKRRKDMPYTKEEQQWQAIRRGRYVEFNLIYDRGTQFGLRTPGSRVESILMSLPEHAS 300 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHTHHHHHC------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCE
T ss_conf 68788999999888899999999973679999899999998488028999876668621154599780368975898883
Q ss_pred CC
Q ss_conf 97
Q gi|254781073|r 306 WP 307 (307)
Q Consensus 306 Wp 307 (307)
|.
T Consensus 301 W~ 302 (328)
T 1txn_A 301 WL 302 (328)
T ss_dssp --
T ss_pred EC
T ss_conf 40
No 4
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=61.61 E-value=2.6 Score=21.15 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHH-HHHCCCCCHHH
Q ss_conf 99999999999999987547999989998-85420240112
Q gi|254781073|r 235 SAVGDCFIKLYPSLVRRNYHHLFSEQDRQ-EQLIRRGRYAE 274 (307)
Q Consensus 235 ~~vg~~fl~~y~~Iv~~r~~~~~~~~~k~-~Ql~rRgRYvE 274 (307)
.++-+.|++.|..... .+.+--+. -|.-.||||||
T Consensus 505 ~~~~~~~l~gY~~~~~-----~~~~Vl~~l~eVr~RgRY~~ 540 (540)
T 3en9_A 505 DEIWERFLEGYKSVYD-----RWEIILELMKDVERRARYVE 540 (540)
T ss_dssp HHHHHHHHHHHHHHCT-----THHHHHHHHHHHHTCSCCC-
T ss_pred HHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999987537-----58999999999985047588
No 5
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=54.98 E-value=7.9 Score=18.06 Aligned_cols=32 Identities=28% Similarity=0.714 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHH
Q ss_conf 67999999998403656---733428999976787
Q gi|254781073|r 167 PDVIFFHNTLKEMCSQH---AVANYTHYKEWCDRY 198 (307)
Q Consensus 167 eD~~~fH~~~k~~Cd~~---~~~~Y~~fKk~CD~Y 198 (307)
.|-..|-.-+|+.|... ..+-|.-.|.|||++
T Consensus 54 kde~~F~~Wlk~~~gAn~kQ~~dcy~cLkeWcd~f 88 (89)
T 1ci4_A 54 KDEDLFREWLKDTCGANAKQSRDCFGCLREWCDAF 88 (89)
T ss_dssp TCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 64999999999980889899988999999999971
No 6
>1bea_A Bifunctional amylase/serine protease inhibitor; amylase/protease bifunctional inhibitor; 1.95A {Zea mays} SCOP: a.52.1.2 PDB: 1bfa_A
Probab=27.98 E-value=14 Score=16.52 Aligned_cols=25 Identities=12% Similarity=0.282 Sum_probs=16.9
Q ss_pred CCCCCCCHHHCCHHHEEECCCCCCCCCCCC
Q ss_conf 368874401023021020243125320011
Q gi|254781073|r 126 PYNPHVPAVHFNIRMIVTGAYWFGGGIDLT 155 (307)
Q Consensus 126 p~nP~vPt~H~N~R~f~~~~~WFGGG~DLT 155 (307)
|.-=++||+| +..|= -|||||.|.+
T Consensus 101 p~~CNL~t~~-G~~~C----~~l~~~g~~~ 125 (127)
T 1bea_A 101 EAECNLATIS-GVAEC----PWILGGGTMP 125 (127)
T ss_dssp TTTTCCCCTT-SSSCC----TTTCC-----
T ss_pred HHHCCCCCCC-CCCCC----EEECCCCCCC
T ss_conf 0005976679-98426----1635888778
No 7
>3kdr_A HK97 family phage portal protein; PSI, MCSG, structural genomics, protein structure initiative; 2.90A {Corynebacterium diphtheriae}
Probab=21.38 E-value=37 Score=13.71 Aligned_cols=43 Identities=2% Similarity=-0.026 Sum_probs=22.0
Q ss_pred CHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9677-9999999999999999999987547999989998854202401122111
Q gi|254781073|r 226 GIDA-DFSFISAVGDCFIKLYPSLVRRNYHHLFSEQDRQEQLIRRGRYAEFNLL 278 (307)
Q Consensus 226 ~~e~-~f~f~~~vg~~fl~~y~~Iv~~r~~~~~~~~~k~~Ql~rRgRYvEFNL~ 278 (307)
+.|. ...|++.+-.-++..+..=+.+.. +.. -.+|+|||||+=
T Consensus 246 nieq~~~~f~~~tL~P~l~~iE~eln~~~---~~~-------~~~g~~~~Fn~~ 289 (310)
T 3kdr_A 246 NAASRMIELVTFGVEPLMSAIEARLNQPD---MHA-------DHLANPLKFDPA 289 (310)
T ss_dssp CHHHHHHHHHHTTTHHHHHHHHHHHTSTT---TCT-------TTTTSCEEECTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHH---CCC-------CCCCCEEEECCC
T ss_conf 59999999999838999999999957764---487-------546816997131
No 8
>2zhn_A Galectin-9; beta sandwich, carbohydrate binding protein, sugar binding protein; HET: NAG GAL; 1.30A {Homo sapiens} PDB: 2eak_A* 2eal_A* 2zhk_A* 2zhm_A* 2zhl_A* 2yy1_A* 3lsd_A 3lse_A*
Probab=21.08 E-value=25 Score=14.80 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=8.8
Q ss_pred CCCCCCCHHHCCHHHE
Q ss_conf 3688744010230210
Q gi|254781073|r 126 PYNPHVPAVHFNIRMI 141 (307)
Q Consensus 126 p~nP~vPt~H~N~R~f 141 (307)
+.++.| +.|+|.||=
T Consensus 53 ~~~~dI-a~HfnpRf~ 67 (148)
T 2zhn_A 53 FSGNDI-AFHFNPRFE 67 (148)
T ss_dssp SSSSCE-EEEEEEECS
T ss_pred CCCCCE-EEEEEEECC
T ss_conf 999988-999878818
No 9
>2r7r_A RNA-dependent RNA polymerase; viral protein, RNA-dependent RNA polymerase, single subunit polymerase fold, fingers, PALM, thumb; 2.60A {Simian rotavirus} PDB: 2r7q_A 2r7s_A 2r7t_A 2r7u_A 2r7v_A 2r7w_A* 2r7x_A* 2r7o_A
Probab=19.13 E-value=18 Score=15.81 Aligned_cols=51 Identities=10% Similarity=0.292 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEE--EEEECCCEEEEEEEEEEE
Q ss_conf 999999999999999996301022223445665125212317888887775048--995059465368877763
Q gi|254781073|r 22 QRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDLGGGRM--ATLCAGKVFEKAAVLVST 93 (307)
Q Consensus 22 ~~wF~~LQd~Ic~~fE~lE~~~~~~~~~~~~~~F~~d~W~R~~g~~~~~GGG~s--~VL~~G~VFEKaGVNfS~ 93 (307)
++-..++|+.|-.....+-.... .---- -|=++ |-|..|++||+||||+=+
T Consensus 645 ~~~lq~vs~~ir~~YsrmNakVK--------------ALaS~-------tGlEiAKRyI~~GkIF~R~~I~i~n 697 (1095)
T 2r7r_A 645 KQMIQDVSNDVRETYARMNAKVK--------------ALVST-------VGIEIAKRYIAGGKIFFRAGINLLN 697 (1095)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCE--------------EEEES-------SCEECSSCEEETTEEECCCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHH-------HHHHHHHHHHHCCCHHHHCCCCCCC
T ss_conf 99999999999999998617898--------------99875-------3289998886312010013651024
No 10
>2fma_A Amyloid beta A4 protein precursor; alpha-beta two-layered sandwich, metal binding protein; 0.85A {Homo sapiens} PDB: 2fjz_A 2fk2_A 2fk3_A 2fk1_A
Probab=17.76 E-value=35 Score=13.91 Aligned_cols=14 Identities=29% Similarity=0.638 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 67999999998403
Q gi|254781073|r 167 PDVIFFHNTLKEMC 180 (307)
Q Consensus 167 eD~~~fH~~~k~~C 180 (307)
++..+||.+++++|
T Consensus 15 ~~~~~W~~~A~e~C 28 (59)
T 2fma_A 15 ETHLHWHTVAKETC 28 (59)
T ss_dssp BCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
T ss_conf 48289999999988
Done!