HHSEARCH alignment of GI: 254781073 and SCOP domain: d1vjua_

Alignment
>d1vjua_ d.248.1.1 (A:) Hypothetical protein Lmaj006828 {Leishmania major [TaxId: 5664]}
Probab=100.00  E-value=0  Score=920.45  Aligned_cols=270  Identities=39%  Similarity=0.751  Sum_probs=259.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEEEE
Q ss_conf             69999999999999999999999996301022223445665125212317888887775048995059465368877763
Q gi|254781073|r   14 IEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDLGGGRMATLCAGKVFEKAAVLVST   93 (307)
Q Consensus        14 ie~kk~~~~~wF~~LQd~Ic~~fE~lE~~~~~~~~~~~~~~F~~d~W~R~~g~~~~~GGG~s~VL~~G~VFEKaGVNfS~   93 (307)
                      |.++.+.+++||++||++||++||++|++          ++|++|.|+|++|     |||+||||++|+||||||||||+
T Consensus         2 m~~~ie~vk~~F~~LQ~~Ic~~lE~le~~----------~~F~~d~W~R~~G-----GGG~t~Vl~~G~VFEKaGVNfS~   66 (302)
T d1vjua_           2 MSLAVEAVKDFLLKLQDDICEALEAEDGQ----------ATFVEDKWTREGG-----GGGRTRVMVDGAVIEKGGVNFSH   66 (302)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------CCCEEEEEEETTT-----EEEEEEEEESCSSEEEEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHCCC----------CCEEEECCCCCCC-----CCCEEEEEECCEEEEECCEEEEE
T ss_conf             76679999999999999999999964077----------8746604303799-----99748997078256644341799


Q ss_pred             EECCCHHHHHHHHHHCCCCCCCEEECEEEEEECCCCCCCHHHCCHHHEEECC------CCCCCCCCCCCCCCHHHCCCHH
Q ss_conf             0035426776421110267651000002233136887440102302102024------3125320011000001104326
Q gi|254781073|r   94 VYGDLSPDFKDQILGTTKNPYFWATGLSVIVHPYNPHVPAVHFNIRMIVTGA------YWFGGGIDLTPSLESRRHSYDP  167 (307)
Q Consensus        94 V~G~~~p~~a~~i~g~~~~~~F~AtGiS~V~Hp~nP~vPt~H~N~R~f~~~~------~WFGGG~DLTP~~~~~~y~~~e  167 (307)
                      |+|+++|+++.++++..++.+|||||||||+||+||+|||+|||+|||+|.+      ||||||+|||||     |+++|
T Consensus        67 V~G~~lP~sa~~~~~~~~~~~f~AtGiSvV~HP~NP~vPt~H~N~R~f~~~~~~~~~~wWFGGG~DLTP~-----~~~~~  141 (302)
T d1vjua_          67 VYGKGLPMSSTERHPDIAGCNFEAMGVSLVIHPKNPHVPTSHANVRLFVAEREGKEPVWWFGGGFDLTPY-----YAVEE  141 (302)
T ss_dssp             EEEEC-----------CTTCEEEEEEEEEEEEESSTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECS-----SCCHH
T ss_pred             EECCCCHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCEEECEEEEEEECCCCCCEEEEECCCCCHHH-----HHHHH
T ss_conf             9854624444421654467740542100000126876761331314899844898621687055451166-----77699


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             79999999984036567334289999767874345325212343010101478666589677999999999999999999
Q gi|254781073|r  168 DVIFFHNTLKEMCSQHAVANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVGDCFIKLYPS  247 (307)
Q Consensus       168 D~~~fH~~~k~~Cd~~~~~~Y~~fKk~CD~YFylpHR~E~RGvGGIFFD~l~~~~~~~~~e~~f~f~~~vg~~fl~~y~~  247 (307)
                      |+++||++||++||+|+++||++||+|||+|||||||+|+|||||||||||++    .+++++|+|+++||++|+++|+|
T Consensus       142 D~~~fH~~~K~~Cd~~~~~~Y~~fKk~CD~YFylpHR~E~RGiGGIFfD~l~~----~~~~~~~~f~~~vg~~fl~~Y~~  217 (302)
T d1vjua_         142 DCRDFHQVAQDLCKPFGADVYARFKGWCDEYFFIPYRNEARGIGGLFFDDLNE----WPFEKCFEFVQAVGKGYMDAYIP  217 (302)
T ss_dssp             HHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHSEEGGGTEESSSEEEEEEEECS----SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEECCCCCCCCCCCEEEEEEECC----CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999998626440012356765402046434212345533043420026----98788799999999999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHEEECCCCCCCCC
Q ss_conf             998754799998999885420240112211110255357357888111411288878897
Q gi|254781073|r  248 LVRRNYHHLFSEQDRQEQLIRRGRYAEFNLLYDKGTNFGFKTGGNVESILASMPPLVAWP  307 (307)
Q Consensus       248 Iv~~r~~~~~~~~~k~~Ql~rRgRYvEFNL~yDRGT~FGL~t~gr~esIl~SlPp~~~Wp  307 (307)
                      ||+||++++||++||+|||+||||||||||||||||+|||+||||||||||||||+|+|.
T Consensus       218 Iv~~r~~~~~~~~~k~~Ql~rRgRYvEFNL~yDRGT~FGL~t~gr~esILmSlPp~~~W~  277 (302)
T d1vjua_         218 IVNRRKNTPYTEQQVEFQEFRRGRYAEFNLVIDRGTKFGLQSGGRTESILISLPPRARWG  277 (302)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTTCCHHHHGGGSCSCCCCC
T ss_pred             HHHHHCCCCCCHHHHHHHHHHCCEEEEEEEEEECCCHHHCCCCCCHHEEEECCCCCCCCC
T ss_conf             999860799878999999985867689999975685020326996110022599768625


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Coproporphyrinogen III oxidase
superfamily: Coproporphyrinogen III oxidase
family: Coproporphyrinogen III oxidase
domain: Hypothetical protein Lmaj006828
species: Leishmania major [TaxId: 5664]