RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781073|ref|YP_003065486.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus str. psy62] (307 letters) >gnl|CDD|180020 PRK05330, PRK05330, coproporphyrinogen III oxidase; Provisional. Length = 300 Score = 376 bits (967), Expect = e-105 Identities = 125/305 (40%), Positives = 165/305 (54%), Gaps = 37/305 (12%) Query: 11 PDDIEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDL 70 ++ R+ LQ IC E L+ EA F W Q+ + Sbjct: 1 TMMEPDKARVKAW-LLGLQDRICAALEALDGEAR----------FVEDSW-----QRPEG 44 Query: 71 GGGRMATLCAGKVFEKAAVLVSTVYGDLSP----DFKDQILGTTKNPYFWATGLSVIVHP 126 GGGR L G+VFEKA V S V+G+ P + ++ G + F ATG+S++ HP Sbjct: 45 GGGRSRVLENGRVFEKAGVNFSHVHGEFLPPSATAHRPELAGRS----FEATGVSLVAHP 100 Query: 127 YNPHVPAVHFNIRMIVTG----AYWFGGGIDLTPSLESRRHSYDPDVIFFHNTLKEMCSQ 182 NP+VP VH N+R + +WFGGG DLTP ++ D + FH T K+ C Sbjct: 101 RNPYVPTVHMNVRFFIATKPGPVWWFGGGFDLTPYYP-----FEEDAVHFHRTAKDACDP 155 Query: 183 HAVANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVGDCFI 242 Y +K+WCD YFYL HR E RG+GGIFFD L+S G + DF+F AVGD F+ Sbjct: 156 FGPEYYPRFKKWCDEYFYLKHRNEPRGVGGIFFDDLNS----PGFERDFAFTQAVGDAFL 211 Query: 243 KLYPSLVRRNYHHLFSEQDRQEQLIRRGRYAEFNLLYDKGTNFGFKTGGNVESILASMPP 302 Y +V R + E++R+ QL RRGRY EFNL+YD+GT FG +TGG ESIL S+PP Sbjct: 212 DAYLPIVERRKDTPYGEREREFQLYRRGRYVEFNLVYDRGTLFGLQTGGRTESILMSLPP 271 Query: 303 LVAWP 307 LV W Sbjct: 272 LVRWE 276 >gnl|CDD|178461 PLN02873, PLN02873, coproporphyrinogen-III oxidase. Length = 274 Score = 253 bits (648), Expect = 5e-68 Identities = 106/255 (41%), Positives = 139/255 (54%), Gaps = 29/255 (11%) Query: 71 GGGRMATLCAGKVFEKAAVLVSTVYGDLSPD---------FKDQILGTTKNPYFWATGLS 121 GGG L G VFEKA V VS VYG + P+ + P+F A GLS Sbjct: 4 GGGISRVLQDGNVFEKAGVNVSVVYGTMPPEAYRAATGRGSRKGGDPAGGVPFF-AAGLS 62 Query: 122 VIVHPYNPHVPAVHFNIRMIVTGA----------YWFGGGIDLTPSLESRRHSYDPDVIF 171 ++HP NP P HFN R T A +WFGGG DLTPS + ++ DV Sbjct: 63 SVMHPKNPMAPTFHFNYRYFETDAPKDVPGAPRQWWFGGGTDLTPS-----YLFEEDVKH 117 Query: 172 FHNTLKEMCSQHAVANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADF 231 FH T K++C +H Y +K+WCD YFY+ HR E RG+GGIFFD L+ + Sbjct: 118 FHGTYKDVCDKHDPEFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLND----RDQEDLL 173 Query: 232 SFISAVGDCFIKLYPSLVRRNYHHLFSEQDRQEQLIRRGRYAEFNLLYDKGTNFGFKTGG 291 +F + V + + Y +V + F+E+ + Q +RRGRY EFNL+YD+GT FG KTGG Sbjct: 174 AFATDVANSVVPAYLPIVEKRKDDPFTEEQKAWQQLRRGRYVEFNLVYDRGTTFGLKTGG 233 Query: 292 NVESILASMPPLVAW 306 +ESIL S+PP W Sbjct: 234 RIESILVSLPPTARW 248 >gnl|CDD|102369 PRK06424, PRK06424, transcription factor; Provisional. Length = 144 Score = 30.3 bits (68), Expect = 0.57 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 7/52 (13%) Query: 64 KSQKEDLGGGRMATLCAGKVFEKAAVLVSTVYGDLSPDFK-----DQILGTT 110 K+ +E L + A L A K+FE+ V+ S GDL PD K ++ILG T Sbjct: 90 KNARERLSMSQ-ADL-AAKIFERKNVIASIERGDLLPDIKTARKLEKILGIT 139 >gnl|CDD|180699 PRK06799, flgK, flagellar hook-associated protein FlgK; Validated. Length = 431 Score = 29.9 bits (67), Expect = 0.85 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%) Query: 101 DFKDQILGTTKNPYFWATGLSVIVHPYNPHVPAVHFNIRMIVTG 144 D +D+IL T + Y + V NP++ +V N + V G Sbjct: 200 DERDRIL-TEMSKY---ANIEVSYESMNPNIASVRMNGVLTVNG 239 >gnl|CDD|177604 PHA03367, PHA03367, single-stranded DNA binding protein; Provisional. Length = 1115 Score = 30.0 bits (68), Expect = 0.87 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 28/92 (30%) Query: 118 TGLSVIVHPYNPHVPAVHFNIRMIVTGAYWFGGGIDLTPSLESRRHSYDPDVIFFHNT-- 175 GL+V ++ +V A H I G + + + S+ + I FHNT Sbjct: 50 CGLTV-EPDFSFNVKAPHKKIDP---------GTVLVKVT------SFHREAIVFHNTDK 93 Query: 176 ---------LKEMCSQ-HAVANYTHYKEWCDR 197 L+ +C + YT + R Sbjct: 94 FPPIFEGPGLERLCEETREKFGYTSFVPPGSR 125 >gnl|CDD|183297 PRK11750, gltB, glutamate synthase subunit alpha; Provisional. Length = 1485 Score = 29.1 bits (66), Expect = 1.4 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 10/36 (27%) Query: 163 HSYDPDVIFFHNTLKEMCSQHAVA--NYTHYKEWCD 196 H+Y+PDV+ NTL Q AV +Y+ Y+E+ Sbjct: 796 HAYNPDVV---NTL-----QKAVQSGDYSDYQEYAK 823 >gnl|CDD|185064 PRK15109, PRK15109, antimicrobial peptide ABC transporter periplasmic binding protein SapA; Provisional. Length = 547 Score = 28.5 bits (64), Expect = 2.2 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 5/36 (13%) Query: 164 SYDPDVIFFHNTLKEMCSQHAVANYTHYKEWCDRYF 199 S DPD F + + S A+ + T+Y WCD F Sbjct: 441 SNDPDSFF-----RPLLSCAAIRSQTNYAHWCDPAF 471 >gnl|CDD|162465 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes. Length = 1057 Score = 27.3 bits (61), Expect = 4.6 Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 3/40 (7%) Query: 88 AVLVST-VYGDL--SPDFKDQILGTTKNPYFWATGLSVIV 124 L+ VY + SP F FW L +++ Sbjct: 992 VWLIFVIVYSSIFPSPAFYKAAPRVMGTFGFWLVLLVIVL 1031 >gnl|CDD|185619 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein; Provisional. Length = 2722 Score = 26.7 bits (59), Expect = 7.2 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Query: 13 DIEERKRISQRKFENLQSIICTEFEKLENEAHE 45 +++E K I + F LQ +I E K+EN HE Sbjct: 1252 NVDELKEIKLQVFSYLQQVI-KENNKMENALHE 1283 >gnl|CDD|177575 PHA03283, PHA03283, envelope glycoprotein E; Provisional. Length = 542 Score = 26.8 bits (59), Expect = 7.6 Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 2/60 (3%) Query: 109 TTKNPYFWATGLSVIVHPYNPHVPAVHFNIRMIVTGAYWFGGGIDLTPSLESRRHSYDPD 168 T K P + P P F++R + Y G DL+ LES DP Sbjct: 167 TVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLSVHLES--DIGDPS 224 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.139 0.442 Gapped Lambda K H 0.267 0.0695 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,252,053 Number of extensions: 337417 Number of successful extensions: 557 Number of sequences better than 10.0: 1 Number of HSP's gapped: 548 Number of HSP's successfully gapped: 16 Length of query: 307 Length of database: 5,994,473 Length adjustment: 93 Effective length of query: 214 Effective length of database: 3,984,929 Effective search space: 852774806 Effective search space used: 852774806 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (25.8 bits)