RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781073|ref|YP_003065486.1| coproporphyrinogen III oxidase
[Candidatus Liberibacter asiaticus str. psy62]
         (307 letters)



>gnl|CDD|180020 PRK05330, PRK05330, coproporphyrinogen III oxidase; Provisional.
          Length = 300

 Score =  376 bits (967), Expect = e-105
 Identities = 125/305 (40%), Positives = 165/305 (54%), Gaps = 37/305 (12%)

Query: 11  PDDIEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDL 70
                ++ R+       LQ  IC   E L+ EA           F    W     Q+ + 
Sbjct: 1   TMMEPDKARVKAW-LLGLQDRICAALEALDGEAR----------FVEDSW-----QRPEG 44

Query: 71  GGGRMATLCAGKVFEKAAVLVSTVYGDLSP----DFKDQILGTTKNPYFWATGLSVIVHP 126
           GGGR   L  G+VFEKA V  S V+G+  P      + ++ G +    F ATG+S++ HP
Sbjct: 45  GGGRSRVLENGRVFEKAGVNFSHVHGEFLPPSATAHRPELAGRS----FEATGVSLVAHP 100

Query: 127 YNPHVPAVHFNIRMIVTG----AYWFGGGIDLTPSLESRRHSYDPDVIFFHNTLKEMCSQ 182
            NP+VP VH N+R  +       +WFGGG DLTP        ++ D + FH T K+ C  
Sbjct: 101 RNPYVPTVHMNVRFFIATKPGPVWWFGGGFDLTPYYP-----FEEDAVHFHRTAKDACDP 155

Query: 183 HAVANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVGDCFI 242
                Y  +K+WCD YFYL HR E RG+GGIFFD L+S     G + DF+F  AVGD F+
Sbjct: 156 FGPEYYPRFKKWCDEYFYLKHRNEPRGVGGIFFDDLNS----PGFERDFAFTQAVGDAFL 211

Query: 243 KLYPSLVRRNYHHLFSEQDRQEQLIRRGRYAEFNLLYDKGTNFGFKTGGNVESILASMPP 302
             Y  +V R     + E++R+ QL RRGRY EFNL+YD+GT FG +TGG  ESIL S+PP
Sbjct: 212 DAYLPIVERRKDTPYGEREREFQLYRRGRYVEFNLVYDRGTLFGLQTGGRTESILMSLPP 271

Query: 303 LVAWP 307
           LV W 
Sbjct: 272 LVRWE 276


>gnl|CDD|178461 PLN02873, PLN02873, coproporphyrinogen-III oxidase.
          Length = 274

 Score =  253 bits (648), Expect = 5e-68
 Identities = 106/255 (41%), Positives = 139/255 (54%), Gaps = 29/255 (11%)

Query: 71  GGGRMATLCAGKVFEKAAVLVSTVYGDLSPD---------FKDQILGTTKNPYFWATGLS 121
           GGG    L  G VFEKA V VS VYG + P+          +         P+F A GLS
Sbjct: 4   GGGISRVLQDGNVFEKAGVNVSVVYGTMPPEAYRAATGRGSRKGGDPAGGVPFF-AAGLS 62

Query: 122 VIVHPYNPHVPAVHFNIRMIVTGA----------YWFGGGIDLTPSLESRRHSYDPDVIF 171
            ++HP NP  P  HFN R   T A          +WFGGG DLTPS     + ++ DV  
Sbjct: 63  SVMHPKNPMAPTFHFNYRYFETDAPKDVPGAPRQWWFGGGTDLTPS-----YLFEEDVKH 117

Query: 172 FHNTLKEMCSQHAVANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADF 231
           FH T K++C +H    Y  +K+WCD YFY+ HR E RG+GGIFFD L+        +   
Sbjct: 118 FHGTYKDVCDKHDPEFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLND----RDQEDLL 173

Query: 232 SFISAVGDCFIKLYPSLVRRNYHHLFSEQDRQEQLIRRGRYAEFNLLYDKGTNFGFKTGG 291
           +F + V +  +  Y  +V +     F+E+ +  Q +RRGRY EFNL+YD+GT FG KTGG
Sbjct: 174 AFATDVANSVVPAYLPIVEKRKDDPFTEEQKAWQQLRRGRYVEFNLVYDRGTTFGLKTGG 233

Query: 292 NVESILASMPPLVAW 306
            +ESIL S+PP   W
Sbjct: 234 RIESILVSLPPTARW 248


>gnl|CDD|102369 PRK06424, PRK06424, transcription factor; Provisional.
          Length = 144

 Score = 30.3 bits (68), Expect = 0.57
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 7/52 (13%)

Query: 64  KSQKEDLGGGRMATLCAGKVFEKAAVLVSTVYGDLSPDFK-----DQILGTT 110
           K+ +E L   + A L A K+FE+  V+ S   GDL PD K     ++ILG T
Sbjct: 90  KNARERLSMSQ-ADL-AAKIFERKNVIASIERGDLLPDIKTARKLEKILGIT 139


>gnl|CDD|180699 PRK06799, flgK, flagellar hook-associated protein FlgK; Validated.
          Length = 431

 Score = 29.9 bits (67), Expect = 0.85
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 101 DFKDQILGTTKNPYFWATGLSVIVHPYNPHVPAVHFNIRMIVTG 144
           D +D+IL T  + Y     + V     NP++ +V  N  + V G
Sbjct: 200 DERDRIL-TEMSKY---ANIEVSYESMNPNIASVRMNGVLTVNG 239


>gnl|CDD|177604 PHA03367, PHA03367, single-stranded DNA binding protein;
           Provisional.
          Length = 1115

 Score = 30.0 bits (68), Expect = 0.87
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 28/92 (30%)

Query: 118 TGLSVIVHPYNPHVPAVHFNIRMIVTGAYWFGGGIDLTPSLESRRHSYDPDVIFFHNT-- 175
            GL+V    ++ +V A H  I           G + +  +      S+  + I FHNT  
Sbjct: 50  CGLTV-EPDFSFNVKAPHKKIDP---------GTVLVKVT------SFHREAIVFHNTDK 93

Query: 176 ---------LKEMCSQ-HAVANYTHYKEWCDR 197
                    L+ +C +      YT +     R
Sbjct: 94  FPPIFEGPGLERLCEETREKFGYTSFVPPGSR 125


>gnl|CDD|183297 PRK11750, gltB, glutamate synthase subunit alpha; Provisional.
          Length = 1485

 Score = 29.1 bits (66), Expect = 1.4
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 10/36 (27%)

Query: 163 HSYDPDVIFFHNTLKEMCSQHAVA--NYTHYKEWCD 196
           H+Y+PDV+   NTL     Q AV   +Y+ Y+E+  
Sbjct: 796 HAYNPDVV---NTL-----QKAVQSGDYSDYQEYAK 823


>gnl|CDD|185064 PRK15109, PRK15109, antimicrobial peptide ABC transporter
           periplasmic binding protein SapA; Provisional.
          Length = 547

 Score = 28.5 bits (64), Expect = 2.2
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 5/36 (13%)

Query: 164 SYDPDVIFFHNTLKEMCSQHAVANYTHYKEWCDRYF 199
           S DPD  F     + + S  A+ + T+Y  WCD  F
Sbjct: 441 SNDPDSFF-----RPLLSCAAIRSQTNYAHWCDPAF 471


>gnl|CDD|162465 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
            flippase.  This model describes the P-type ATPase
            responsible for transporting phospholipids from one
            leaflet of bilayer membranes to the other. These ATPases
            are found only in eukaryotes.
          Length = 1057

 Score = 27.3 bits (61), Expect = 4.6
 Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 3/40 (7%)

Query: 88   AVLVST-VYGDL--SPDFKDQILGTTKNPYFWATGLSVIV 124
              L+   VY  +  SP F            FW   L +++
Sbjct: 992  VWLIFVIVYSSIFPSPAFYKAAPRVMGTFGFWLVLLVIVL 1031


>gnl|CDD|185619 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
            Provisional.
          Length = 2722

 Score = 26.7 bits (59), Expect = 7.2
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 13   DIEERKRISQRKFENLQSIICTEFEKLENEAHE 45
            +++E K I  + F  LQ +I  E  K+EN  HE
Sbjct: 1252 NVDELKEIKLQVFSYLQQVI-KENNKMENALHE 1283


>gnl|CDD|177575 PHA03283, PHA03283, envelope glycoprotein E; Provisional.
          Length = 542

 Score = 26.8 bits (59), Expect = 7.6
 Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 109 TTKNPYFWATGLSVIVHPYNPHVPAVHFNIRMIVTGAYWFGGGIDLTPSLESRRHSYDPD 168
           T K P          + P  P      F++R   +  Y  G   DL+  LES     DP 
Sbjct: 167 TVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLSVHLES--DIGDPS 224


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.139    0.442 

Gapped
Lambda     K      H
   0.267   0.0695    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,252,053
Number of extensions: 337417
Number of successful extensions: 557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 548
Number of HSP's successfully gapped: 16
Length of query: 307
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 214
Effective length of database: 3,984,929
Effective search space: 852774806
Effective search space used: 852774806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)