RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781073|ref|YP_003065486.1| coproporphyrinogen III oxidase
[Candidatus Liberibacter asiaticus str. psy62]
(307 letters)
>2aex_A Coproporphyrinogen III oxidase, mitochondrial; FLAT
beta-sheet sandwiched by helices, oxidoreductase; HET:
CIT; 1.58A {Homo sapiens} (A:)
Length = 346
Score = 308 bits (790), Expect = 6e-85
Identities = 112/310 (36%), Positives = 155/310 (50%), Gaps = 38/310 (12%)
Query: 11 PDDIEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDL 70
+ K + Q+ +C +++ A+ F+V W ++++
Sbjct: 34 RRRPGDMKTKMELLILETQAQVCQALAQVDGGAN----------FSVDRW-----ERKEG 78
Query: 71 GGGRMATLCAGKVFEKAAVLVSTVYGDLSPDFKDQILGTTKNP-------YFWATGLSVI 123
GGG L G VFEKA V +S V+G+LS + Q+ K F A G+S +
Sbjct: 79 GGGISCVLQDGCVFEKAGVSISVVHGNLSEEAAKQMRSRGKVLKTKDGKLPFCAMGVSSV 138
Query: 124 VHPYNPHVPAVHFNIRMIVT------GAYWFGGGIDLTPSLESRRHSYDPDVIFFHNTLK 177
+HP NPH P +HFN R +WFGGG DLTP+ D + FH TLK
Sbjct: 139 IHPKNPHAPTIHFNYRYFEVEEADGNKQWWFGGGCDLTPTYL-----NQEDAVHFHRTLK 193
Query: 178 EMCSQHAVANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAV 237
E C QH Y +K+WCD YF++ HR E RGIGGIFFD L S + F F+ +
Sbjct: 194 EACDQHGPDLYPKFKKWCDDYFFIAHRGERRGIGGIFFDDLDS----PSKEEVFRFVQSC 249
Query: 238 GDCFIKLYPSLVRRNYHHLFSEQDRQEQLIRRGRYAEFNLLYDKGTNFGFKT-GGNVESI 296
+ Y LV+++ F+ Q++ Q +RRGRY EFNLLYD+GT FG T G +ESI
Sbjct: 250 ARAVVPSYIPLVKKHCDDSFTPQEKLWQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESI 309
Query: 297 LASMPPLVAW 306
L S+P W
Sbjct: 310 LMSLPLTARW 319
>1vju_A Coproporphyrinogen III oxidase; structural genomics, PSI,
protein structure initiative, structural genomics of
pathogenic protozoa consortium; 1.40A {Leishmania major}
(A:1-232)
Length = 232
Score = 230 bits (588), Expect = 2e-61
Identities = 79/250 (31%), Positives = 106/250 (42%), Gaps = 30/250 (12%)
Query: 11 PDDIEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDL 70
+ LQ IC E + +A F W R E
Sbjct: 6 HHHXSLAVEAVKDFLLKLQDDICEALEAEDGQAT----------FVEDKWTR-----EGG 50
Query: 71 GGGRMATLCAGKVFEKAAVLVSTVYGDLSPDFKDQILGTTKNPYFWATGLSVIVHPYNPH 130
GGGR G V EK V S VYG P + F A G+S+++HP NPH
Sbjct: 51 GGGRTRVXVDGAVIEKGGVNFSHVYGKGLPXSSTERHPDIAGCNFEAXGVSLVIHPKNPH 110
Query: 131 VPAVHFNIRMIVT------GAYWFGGGIDLTPSLESRRHSYDPDVIFFHNTLKEMCSQHA 184
VP H N+R+ V +WFGGG DLTP + D FH +++C
Sbjct: 111 VPTSHANVRLFVAEREGKEPVWWFGGGFDLTPYYA-----VEEDCRDFHQVAQDLCKPFG 165
Query: 185 VANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVGDCFIKL 244
Y +K WCD YF++P+R E+RGIGG+FFD L+ + F F+ AVG +
Sbjct: 166 ADVYARFKGWCDEYFFIPYRNEARGIGGLFFDDLNE----WPFEKCFEFVQAVGKGYXDA 221
Query: 245 YPSLVRRNYH 254
Y +V R +
Sbjct: 222 YIPIVNRRKN 231
>1txn_A Coproporphyrinogen III oxidase; structural genomics, dimer,
novel fold, PSI, protein structure initiative; 1.70A
{Saccharomyces cerevisiae} (A:1-249)
Length = 249
Score = 230 bits (587), Expect = 2e-61
Identities = 81/265 (30%), Positives = 105/265 (39%), Gaps = 47/265 (17%)
Query: 11 PDDIEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDL 70
++ + Q+ I E ++ F W R
Sbjct: 6 DPRNLPIRQQXEALIRRKQAEITQGLESID-----------TVKFHADTWTRGNDG---- 50
Query: 71 GGGRMATLCAGKVFEKAAVLVSTVYGDLSPDFKDQILGTTKN----------------PY 114
GGG + G FEK V VS VYG LSP KN
Sbjct: 51 GGGTSXVIQDGTTFEKGGVNVSVVYGQLSPAAVSAXKADHKNLRLPEDPKTGLPVTDGVK 110
Query: 115 FWATGLSVIVHPYNPHVPAVHFNIRMIVTG-------AYWFGGGIDLTPSLESRRHSYDP 167
F+A GLS ++HP NPH P H N R T +WFGGG DLTPS Y+
Sbjct: 111 FFACGLSXVIHPVNPHAPTTHLNYRYFETWNQDGTPQTWWFGGGADLTPSYL-----YEE 165
Query: 168 DVIFFHNTLKEMCSQHAVANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGI 227
D FH K+ +H A Y +K+WCD YFY+ HR+E+RGIGGIFFD
Sbjct: 166 DGQLFHQLHKDALDKHDTALYPRFKKWCDEYFYITHRKETRGIGGIFFDDYDE----RDP 221
Query: 228 DADFSFISAVGDCFIKLYPSLVRRN 252
+ D F+ Y ++V+R
Sbjct: 222 QEILKXVEDCFDAFLPSYLTIVKRR 246
>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A
{Saccharomyces cerevisiae} (A:)
Length = 312
Score = 26.5 bits (58), Expect = 4.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 93 TVYGDLSPDFKDQILGTTKNPYFWATGLSVIVHPYN 128
++ D+S D++ + K P++ + LSV +HP
Sbjct: 202 QMFEDISADYRTKTATIEKLPFYKNSVLSVSIHPCK 237
>2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B-
hydrolase fold, acyltransferase, acetyl coenzyme A,
antibiotic biosynthesis; HET: COA; 2.2A {Acremonium
chrysogenum} (A:236-365)
Length = 130
Score = 26.5 bits (58), Expect = 4.6
Identities = 10/57 (17%), Positives = 20/57 (35%)
Query: 11 PDDIEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQK 67
++ER ++ +++ NS I V +LR ++QK
Sbjct: 52 KPAMDERFHMAPGVQAGRNISSQDAKKEINGTDSGNSHRAGQPIEAVSSYLRYQAQK 108
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP;
2.57A {Sulfolobus acidocaldarius} (A:)
Length = 194
Score = 26.2 bits (56), Expect = 6.0
Identities = 5/58 (8%), Positives = 10/58 (17%)
Query: 10 CPDDIEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQK 67
D R + N +A S + + +
Sbjct: 123 EADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEG 180
>3dnx_A Uncharacterized protein SPO1766; structural genomics,
APC88088, protein of unknown function, PSI-2, protein
structure initiative; HET: MSE; 1.94A {Silicibacter
pomeroyi} (A:)
Length = 153
Score = 25.9 bits (57), Expect = 6.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 183 HAVANYTHYKEWCDRYFYLPH 203
A A + Y EWCDRYF+
Sbjct: 67 QADAKWQGYLEWCDRYFWAVD 87
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology
domain, zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} (A:)
Length = 150
Score = 25.7 bits (55), Expect = 8.7
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 4/77 (5%)
Query: 192 KEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVGDCFIKLYPSLVRR 251
+ + R+F+L + + D S G I D + + L +
Sbjct: 38 RSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNNKVRRFAFELKMQ 97
Query: 252 NYHHLF----SEQDRQE 264
+ SE + +E
Sbjct: 98 DKSSYLLAADSEVEMEE 114
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II,
NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides
thetaiotaomicron vpi-5482} (A:280-363,A:498-612)
Length = 199
Score = 25.4 bits (55), Expect = 9.3
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 282 GTNFGFKTGGN 292
GT+FG G N
Sbjct: 3 GTSFGHWGGAN 13
>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1,
glycosyltransferase, metal-binding, queuosine
biosynthesis, tRNA processing, zinc; HET: PRF; 1.19A
{Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A* 1ozm_A* 1r5y_A*
1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A* 1p0d_A 1p0e_A*
1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A* 1q65_A* 1q66_A*
1k4g_A* 1s38_A* ... (A:)
Length = 386
Score = 25.5 bits (55), Expect = 9.6
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 248 LVRRNYHHLFSEQDRQEQLIRRGRYAEF 275
+ N + I GR+++F
Sbjct: 346 MTEHNIAFYQQLMQKIRDSISEGRFSQF 373
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.139 0.442
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,588,466
Number of extensions: 122619
Number of successful extensions: 306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 23
Length of query: 307
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 219
Effective length of database: 1,981,209
Effective search space: 433884771
Effective search space used: 433884771
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)