HHsearch alignment for GI: 254781074 and conserved domain: pfam03167
>pfam03167 UDG Uracil DNA glycosylase superfamily.
Probab=99.41 E-value=1.7e-12 Score=98.13 Aligned_cols=132 Identities=29% Similarity=0.365 Sum_probs=101.4
Q ss_pred HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCH---HCCCCC
Q ss_conf 61779998118887752000710003479863046999999999741888877401243220896886010---112368
Q gi|254781074|r 57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAV---LTVEEG 133 (227)
Q Consensus 57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~---LTv~~g 133 (227)
T Consensus 6 ~~a~i~ivg~~Pg~~-~~~~G~~f~g~~----g~~l~~~l~~~---------------gl~~~~~~itn~~~c~~~~~~~ 65 (147)
T pfam03167 6 PNAKVLIVGEAPGPG-EDATGLPFAGRA----GNLLWRILAEA---------------GLAREGVYLTNVVKCPRPVGRK 65 (147)
T ss_pred CCCCEEEEECCCCHH-HHHCCCCCCCCH----HHHHHHHHHHH---------------CCCCCCEEEEEEECCCCCCCCC
T ss_conf 999999996798756-763699675756----99999999982---------------8875577998532256876799
Q ss_pred CCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCC-------CCCCEEEEECCCCHHHCCCCCCCCCHHH
Q ss_conf 604454325999999999999617898799997532333442057-------6660799847888222578862787089
Q gi|254781074|r 134 RAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDVLD-------HKRHLVLKAAHPSPLSASHGFFGCRHFS 206 (227)
Q Consensus 134 ~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~i~-------~~~~~il~~~HPSPls~~~gF~~~~~F~ 206 (227)
T Consensus 66 ~~~~ei~~~~-~~---L~~~i~~i~p~viv~l-G~~a~~~~~~~~~~~~~~~~~~~~v~~~~HPS~l~~~~~~~~~~~~~ 140 (147)
T pfam03167 66 PTRSEIAACW-PY---LLEELALLRPKVVVLL-GKTAAKAFLGLGKKESLFEGGGIPVLPLPHPSPLNRNPGFKRPEAFR 140 (147)
T ss_pred CCHHHHHHHH-HH---HHHHHHHCCCCEEEEE-CHHHHHHHHCCCCCCCEECCCCCEEEEECCCHHHHCCHHHCCHHHHH
T ss_conf 8989999989-99---9999985596689998-89999998477876522426991799955907974197641747899
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781074|r 207 KANRYLQ 213 (227)
Q Consensus 207 ~~N~~L~ 213 (227)
T Consensus 141 ~~~~~L~ 147 (147)
T pfam03167 141 EALEDLK 147 (147)
T ss_pred HHHHHHC
T ss_conf 9999729