HHsearch alignment of GI: 254781074 and MMDB domain: 1udg_A_70-244
>1udg_A (A:70-244) Uracil-DNA glycosylase; hydrolase; 1.75A {Herpes simplex virus}
Probab=100.00 E-value=0 Score=493.36 Aligned_cols=174 Identities=44% Similarity=0.743 Sum_probs=167.9
Q ss_pred HHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCH
Q ss_conf 9984299861779998118887752000710003479863046999999999741-888877401243220896886010
Q gi|254781074|r 49 RAFDITPFNKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAV 127 (227)
Q Consensus 49 ~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~ 127 (227)
+|+++||+++|||||+||||||++|+|+||||||+.++++|||||||||||.+|+ ++..+++|||++||+||||||||+
T Consensus 1 a~~~~~p~~~vkVVIlGQDPY~~~~~A~GlaFsv~~~~~~p~SL~NI~kel~~~~~~~~~~~~g~L~~wakQGVLLLNt~ 80 (175)
T 1udg_A 1 SWTRYCTPDEVRVVIIGQDPYHHPGQAHGLAFSVRANVPPPPSLRNVLAAVKNCYPEARMSGHGCLEKWARDGVLLLNTT 80 (175)
T ss_dssp THHHHSCGGGCCEEEEECSCCCSTTTCSSSSSCCCTTSCCCHHHHHHHHHHHHHCTTCCCCSCCCCHHHHHTTEEEEESS
T ss_pred HHHHCCCHHHCEEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEEEE
T ss_conf 99876575334699996158876640333331367641323778999999975347777777887777852777877504
Q ss_pred HCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHH
Q ss_conf 11236860445432599999999999961789879999753233344205766607998478882225788627870899
Q gi|254781074|r 128 LTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSK 207 (227)
Q Consensus 128 LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~ 207 (227)
|||++|+++||+++||++||+.+|++|+++++++||||||++||+++..+. .+|+||+++|||||| ++||+||+||++
T Consensus 81 LTv~~g~~~SH~~~gWe~ft~~ii~~l~~~~~~vvf~LwG~~A~~~~~~~~-~~h~il~~~HPSpls-~~~F~~~~~F~~ 158 (175)
T 1udg_A 81 LTVKRGAAASHSRIGWDRFVGGVIRRLAARRPGLVFMLWGTHAQNAIRPDP-RVHCVLKFSHPSPLS-KVPFGTCQHFLV 158 (175)
T ss_dssp CCEETTBTTTTTTSSHHHHHHHHHHHHHHHCSSCEEEEESHHHHHHCCCCT-TTSEEEEECCSSTTS-SSCGGGCCHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCCC-CCCEEEEECCCCHHH-CCCCCCCCHHHH
T ss_conf 888725457764210999999999999728898699973466765620389-998699878998454-369899977999
Q ss_pred HHHHHHHCCCCCCCCCC
Q ss_conf 99999987889746508
Q gi|254781074|r 208 ANRYLQEHGKTTVNWQI 224 (227)
Q Consensus 208 ~N~~L~~~~~~~IdW~l 224 (227)
||++|+++|++||||+|
T Consensus 159 ~N~~L~~~~~~pIdW~l 175 (175)
T 1udg_A 159 ANRYLETRSISPIDWSV 175 (175)
T ss_dssp HHHHHHTTTCCCCCCCC
T ss_pred HHHHHHHCCCCCCCCCC
T ss_conf 99999987999945849