Query gi|254781074|ref|YP_003065487.1| uracil-DNA glycosylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 227
No_of_seqs 140 out of 1475
Neff 5.8
Searched_HMMs 33803
Date Wed Jun 1 21:57:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781074.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2boo_A UDG, uracil-DNA glycos 100.0 0 0 598.1 23.2 225 1-227 18-243 (247)
2 >2zhx_A UDG, uracil-DNA glycos 100.0 0 0 589.4 19.6 220 3-225 18-238 (238)
3 >3fci_A UDG, uracil-DNA glycos 100.0 0 0 585.8 20.3 219 5-224 3-222 (223)
4 >4eug_A UDG, UNG, protein (gly 100.0 0 0 522.1 17.2 179 48-226 1-180 (185)
5 >2j8x_A Uracil-DNA glycosylase 100.0 0 0 507.0 17.0 176 48-224 1-184 (184)
6 >3cxm_A Uracil-DNA glycosylase 100.0 0 0 503.5 17.6 179 49-227 1-182 (186)
7 >1udg_A Uracil-DNA glycosylase 100.0 0 0 493.4 16.2 174 49-224 1-175 (175)
8 >2owr_A UDG, uracil-DNA glycos 100.0 0 0 452.4 11.4 169 46-226 1-169 (171)
9 >2c2q_A G/U mismatch-specific 96.2 0.028 8.3E-07 34.5 7.7 130 56-197 23-167 (199)
10 >1mug_A Protein (G:T/U specifi 96.0 0.11 3.2E-06 30.9 10.0 127 57-197 8-148 (168)
11 >1wyw_A TDG, G/T mismatch-spec 95.5 0.15 4.5E-06 30.0 8.9 148 57-215 21-190 (199)
12 >2d3y_A Uracil-DNA glycosylase 93.6 0.28 8.3E-06 28.3 6.5 128 57-196 49-197 (219)
13 >1ui0_A Uracil-DNA glycosylase 91.9 0.36 1.1E-05 27.7 5.2 137 56-215 31-188 (205)
14 >3ikb_A Uncharacterized conser 89.8 0.61 1.8E-05 26.2 4.8 121 56-195 2-137 (165)
15 >1vk2_A Uracil-DNA glycosylase 89.6 0.63 1.9E-05 26.1 4.7 117 57-197 49-181 (204)
16 >1oe4_A SMUG1, single-strand s 83.7 3.4 0.0001 21.6 5.9 150 55-216 50-240 (247)
17 >3hrg_A Uncharacterized protei 39.0 23 0.00067 16.5 2.5 25 74-98 18-58 (82)
18 >1z40_A Apical membrane antige 26.2 46 0.0014 14.6 2.5 71 59-137 6-85 (151)
No 1
>>2boo_A UDG, uracil-DNA glycosylase; UNG, base excision repair, radiation resistance, DNA damage, DNA repair, glycosidase, hydrolase; 1.8A {Deinococcus radiodurans} (A:)
Probab=100.00 E-value=0 Score=598.12 Aligned_cols=225 Identities=48% Similarity=0.920 Sum_probs=217.4
Q ss_pred CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEE
Q ss_conf 98686873389998887265899999999999997798085887699999842998617799981188877520007100
Q gi|254781074|r 1 MEGVKIHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCF 80 (227)
Q Consensus 1 l~~l~i~~sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaF 80 (227)
|.+..|+++|+++|++|+.++|+.+|.++|.+++.+ .+|||++++||+||++||+++|||||+||||||++|||+||||
T Consensus 18 ~~~~~i~~~W~~~l~~e~~~~y~~~l~~~l~~~~~~-~~i~P~~~~iF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaF 96 (247)
T 2boo_A 18 IIPANLPEDWQEALLPEFSAPYFHELTDFLRQERKE-YTIYPPAPDVFNALRYTPLGEVKVLILGQDPYHGPNQAHGLSF 96 (247)
T ss_dssp CSCTTCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHH-SCEESCGGGTTHHHHHSCGGGCCEEEEESSCCCSTTCCSSSSS
T ss_pred CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCEECEEEE
T ss_conf 766788888999999886329999999999999838-9244988999999852698577599995568855552211200
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 03479863046999999999741-88887740124322089688601011236860445432599999999999961789
Q gi|254781074|r 81 SVPLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQ 159 (227)
Q Consensus 81 sv~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~ 159 (227)
||+.++++|||||||||||++|| ++..+.+|||++||+||||||||+|||++|+|+||+++||++||+.+|++|+++++
T Consensus 97 sv~~~~~~p~SL~NI~kEL~~d~~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gWe~ft~~ii~~l~~~~~ 176 (247)
T 2boo_A 97 SVRPGVRVPPSLRNIYKELTEDIPGFVAPKHGYLRSWAEQGVLLLNAVLTVRAGQANSHQGKGWEHFTDAVIKAVNAKEE 176 (247)
T ss_dssp CCCTTSCCCHHHHHHHHHHHHHSTTCCCCSSCCCHHHHTTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHTCSS
T ss_pred ECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 31179789932789999999860798788886266697687789860165218875665213099999999999982568
Q ss_pred CEEEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 87999975323334420576660799847888222578862787089999999987889746508898
Q gi|254781074|r 160 NIVFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQIPLS 227 (227)
Q Consensus 160 ~vVfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~lp~~ 227 (227)
++||||||++||++++.|+..+|+||+++||||||+ |||+||+||++||++|+++|++||||+||.+
T Consensus 177 ~iVf~LWG~~A~~~~~~i~~~~~~il~s~HPSpls~-~~F~~~~~F~~~N~~L~~~g~~pIdW~lp~~ 243 (247)
T 2boo_A 177 RVVFILWGSYARKKKKLITGKNHVVIESGHPSPLSE-QYFFGTRPFSKTNEALEKAGRGPVEWQLPAT 243 (247)
T ss_dssp CCEEEEESHHHHGGGGGCCCTTCEEEEECCSSTTTG-GGTTTCCHHHHHHHHHHHTTCCCCCCCCCSS
T ss_pred CEEEEEEHHHHHHHHHHCCCCCCEEEECCCCCHHHC-CCCCCCCHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 859997157899887404677865997089881113-8998998489999999987999862018873
No 2
>>2zhx_A UDG, uracil-DNA glycosylase; DNA repair, UNG-UGI complex, UNG-DNA interactions, cytoplasm, DNA damage; 3.10A {Mycobacterium tuberculosis} (A:)
Probab=100.00 E-value=0 Score=589.36 Aligned_cols=220 Identities=40% Similarity=0.767 Sum_probs=214.2
Q ss_pred CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEEC
Q ss_conf 68687338999888726589999999999999779808588769999984299861779998118887752000710003
Q gi|254781074|r 3 GVKIHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCFSV 82 (227)
Q Consensus 3 ~l~i~~sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFsv 82 (227)
...++++|+++|+. .++|+.+|.++|.+++.++.+|||+.++||+||+ ||+++|||||+||||||++|||+||||||
T Consensus 18 ~~~i~~~W~~~l~~--~~~~~~~l~~~l~~~~~~~~~i~P~~~~iF~a~~-~p~~~vKVVIlGQDPY~~~g~A~GlaFSv 94 (238)
T 2zhx_A 18 SELVERGWAAALEP--VADQVAHMGQFLRAEIAAGRRYLPAGSNVLRAFT-FPFDNVRVLIVGQDPYPTPGHAVGLSFSV 94 (238)
T ss_dssp GGTSCSSHHHHHGG--GHHHHHHHHHHHHHHHHTTCCCSSCGGGTTGGGG-SCSTTCCEEEECCSCCSSTTTCCSSSSCC
T ss_pred HHHCCHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHC-CCHHHCEEEEEECCCCCCCCCEEEEEECC
T ss_conf 55328779999998--8999999999999999869968908788887746-99789368998504888888055553026
Q ss_pred CCCC-CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 4798-630469999999997418888774012432208968860101123686044543259999999999996178987
Q gi|254781074|r 83 PLGI-RIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNI 161 (227)
Q Consensus 83 ~~~~-~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~v 161 (227)
+.++ ++|||||||||||++|+|+..|++|||++||+||||||||+|||++|+|+||+++||++||+.+|++|+++++++
T Consensus 95 ~~~~~~~P~SL~NI~keL~~~~g~~~~~~g~L~~WakQGVLLLNt~LTv~~g~~~SH~~~gWe~ft~~ii~~l~~~~~~i 174 (238)
T 2zhx_A 95 APDVRPWPRSLANIFDEYTADLGYPLPSNGDLTPWAQRGVLLLNRVLTVRPSNPASHRGKGWEAVTECAIRALAARAAPL 174 (238)
T ss_dssp CTTCCSCCHHHHHHHHHHHHHSSCCCCSSSCCHHHHTTTEECCCSSCCCCTTCTTTTTTSSHHHHHHHHHHHHHHSSSCE
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 89997775679999999998519999999887778617738986457787686577300229999999999998205782
Q ss_pred EEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9999753233344205766607998478882225788627870899999999878897465088
Q gi|254781074|r 162 VFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQIP 225 (227)
Q Consensus 162 VfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~lp 225 (227)
||||||++||+++++|+..+|+||+++||||||++|||+||+||++||++|+++|++||||+||
T Consensus 175 Vf~LwG~~A~~~~~~i~~~~~~vl~s~HPSpls~~~~F~~~~~F~~~N~~L~~~~~~~IdW~lp 238 (238)
T 2zhx_A 175 VAILWGRDASTLKPMLAAGNCVAIESPHPSPLSASRGFFGSRPFSRANELLVGMGAEPIDWRLP 238 (238)
T ss_dssp EEEEESHHHHTTTTTSCSSSEEEEEECCSSTTTGGGTTTTCCHHHHHHHHHHHTTCCCCCCCCC
T ss_pred EEEEEECHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 8999834344433024677866997489995022579989983899999999869998268897
No 3
>>3fci_A UDG, uracil-DNA glycosylase; DNA repair, alternative splicing, disease mutation, DNA damage, glycosidase, HOST- virus interaction, hydrolase; HET: 3FI; 1.27A {Homo sapiens} PDB: 1emh_A* 1emj_A* 1q3f_A* 1ssp_E* 1ugh_E 1akz_A* 2oxm_A* 2oyt_A* 3fcf_A* 2hxm_A* 3fck_B* 3fcl_A* 2ssp_E* 1yuo_A 4skn_E* 1okb_A (A:)
Probab=100.00 E-value=0 Score=585.79 Aligned_cols=219 Identities=50% Similarity=0.893 Sum_probs=213.5
Q ss_pred CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEECCC
Q ss_conf 68733899988872658999999999999977980858876999998429986177999811888775200071000347
Q gi|254781074|r 5 KIHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCFSVPL 84 (227)
Q Consensus 5 ~i~~sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFsv~~ 84 (227)
.|+++|+++|++|+.++|+.+|.++|.+++.. .+|||++++|||||++||+++|||||+||||||++|||+||||||++
T Consensus 3 ~i~~~W~~~l~~e~~~~~~~~l~~~l~~~~~~-~~i~P~~~~if~af~~~p~~~vkVVIlGQDPY~~~g~A~GlaFsv~~ 81 (223)
T 3fci_A 3 FFGESWKKHLSGEFGKPYFIKLMGFVAEERKH-YTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQR 81 (223)
T ss_dssp SSCHHHHHHHGGGTTSHHHHHHHHHHHHHHHH-SCEESCGGGTTGGGTSSCGGGCCEEEEECSCCCSTTTCCSSTTCCCT
T ss_pred CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC-CEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCEEEEEECCC
T ss_conf 66767999999896649999999999999719-90518808999998727985747999943587667741003331258
Q ss_pred CCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 9863046999999999741-888877401243220896886010112368604454325999999999999617898799
Q gi|254781074|r 85 GIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNIVF 163 (227)
Q Consensus 85 ~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~vVf 163 (227)
++++|||||||||||.+|+ ++..|++|||++||+||||||||+|||++|+|+||+++||++||+.+|++|+++++++||
T Consensus 82 ~~~~p~SL~NI~kel~~~~~~~~~p~~g~L~~Wa~qGVLLLNt~LTv~~g~~~sH~~~gWe~ft~~ii~~l~~~~~~iVf 161 (223)
T 3fci_A 82 PVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVF 161 (223)
T ss_dssp TSCCCHHHHHHHHHHHHHSTTCCCCSSCCTHHHHTTTEEEEESSCCEETTCTTTTTTSSHHHHHHHHHHHHHHHCCSCEE
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCEEEEECCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 85458508999999987515887888660466751776888661899755345752126899999999998664778398
Q ss_pred EEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9975323334420576660799847888222578862787089999999987889746508
Q gi|254781074|r 164 MLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQI 224 (227)
Q Consensus 164 iLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~l 224 (227)
||||++|++++++|+..+|+||+++||||||++|||+||+||++||++|+++|++||||+|
T Consensus 162 ~LwG~~A~~~~~~i~~~~h~il~~~HPSpls~~~~F~~~~~F~~~N~~L~~~g~~~IdW~~ 222 (223)
T 3fci_A 162 LLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKE 222 (223)
T ss_dssp EEESHHHHHHTTTCCTTTSEEEEECCSSTTTGGGTTTTCCHHHHHHHHHHHTTCCCCCTTC
T ss_pred EEHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEE
T ss_conf 7438779999875157898699806998202378988998789999999986989948804
No 4
>>4eug_A UDG, UNG, protein (glycosylase); 1.40A {Escherichia coli} (A:45-229)
Probab=100.00 E-value=0 Score=522.12 Aligned_cols=179 Identities=59% Similarity=1.061 Sum_probs=176.4
Q ss_pred HHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECC
Q ss_conf 99984299861779998118887752000710003479863046999999999741-88887740124322089688601
Q gi|254781074|r 48 FRAFDITPFNKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNA 126 (227)
Q Consensus 48 F~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt 126 (227)
|+||++||+++|||||+||||||++|+|+||||||+.++++|||||||||||++|| ++..|++|||++||+||||||||
T Consensus 1 F~a~~~~p~~~vkVVIlGQDPY~~~~~A~GlaFsv~~~~~~p~SL~NI~kel~~~~~~~~~p~~g~L~~Wa~QGVLLLN~ 80 (185)
T 4eug_A 1 FNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNT 80 (185)
T ss_dssp THHHHHSCGGGCCEEEEESSCCCSTTTCSSSTTCCCTTSCCCHHHHHHHHHHHHHSTTCCCCSCCCCHHHHTTTEEEEES
T ss_pred HHHHHCCCHHHCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCEEEEEE
T ss_conf 99986089858579999547886554344022013589888824999999999873899778998540454167267742
Q ss_pred HHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHH
Q ss_conf 01123686044543259999999999996178987999975323334420576660799847888222578862787089
Q gi|254781074|r 127 VLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFS 206 (227)
Q Consensus 127 ~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~ 206 (227)
+|||++|+++||+++||++||+.+|++|+++++++||||||++||++++.|+..+|+||+++||||||++|||+||+||+
T Consensus 81 ~LTv~~~~~~SH~~~gWe~ft~~ii~~i~~~~~~ivf~LwG~~A~~~~~~i~~~~~~vl~~~HPSPls~~~~F~~~~~F~ 160 (185)
T 4eug_A 81 VLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPQPSPLSAHRGFFGCNHFV 160 (185)
T ss_dssp SCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCSSCEEEEESHHHHHHTTTSCTTTSEEEEECCSSTTTGGGTTTTCCHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHCCCCCEEEECCCCCCHHCCCCCCCCCHHH
T ss_conf 58997366666310128999999999997178886999851116778765046786599838998020478987898699
Q ss_pred HHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999998788974650889
Q gi|254781074|r 207 KANRYLQEHGKTTVNWQIPL 226 (227)
Q Consensus 207 ~~N~~L~~~~~~~IdW~lp~ 226 (227)
+||++|+++|++||||+++.
T Consensus 161 ~~N~~L~~~~~~~IdW~~~~ 180 (185)
T 4eug_A 161 LANQWLEQHGETPIDWMPVL 180 (185)
T ss_dssp HHHHHHHHTTCCCCCCSCCC
T ss_pred HHHHHHHHCCCCCEECCCCC
T ss_conf 99999998699986488889
No 5
>>2j8x_A Uracil-DNA glycosylase; hydrolase/inhibitor, hydrolase/inhibitor complex, EBV, DNA repair, lytic protein, epstein-BARR virus; 2.3A {Epstein-barr virus} (A:48-231)
Probab=100.00 E-value=0 Score=506.99 Aligned_cols=176 Identities=49% Similarity=0.919 Sum_probs=172.2
Q ss_pred HHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECC
Q ss_conf 99984299861779998118887752000710003479863046999999999741-88887740124322089688601
Q gi|254781074|r 48 FRAFDITPFNKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNA 126 (227)
Q Consensus 48 F~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt 126 (227)
|+||++||+++|||||+||||||+ |+|+||||||+.++++|||||||||||.+|+ ++..|++|||++||+||||||||
T Consensus 1 F~af~~~~~~~vkVVIlGQDPY~~-~~A~GlaFsv~~~~~~p~SL~NI~kel~~d~~~~~~p~~g~L~~WakQGVLLLNt 79 (184)
T 2j8x_A 1 MAWARFCDPSDIKVVILGQDPYHG-GQANGLAFSVAYGFPVPPSLRNIYAELHRSLPEFSPPDHGCLDAWASQGVLLLNT 79 (184)
T ss_dssp TGGGSSSCGGGCCEEEEECSCCSS-SCCCSSSSCCCTTSCCCHHHHHHHHHHHHHCTTCCCCSSCCCHHHHTTTEEEEES
T ss_pred HHHHHCCCHHHEEEEEEECCCCCC-CCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEEE
T ss_conf 999874996684899985467878-8632455304568978822999999998634768766779857886497688865
Q ss_pred HHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCCEEEEECCCCHH-------HCCCCC
Q ss_conf 0112368604454325999999999999617898799997532333442057666079984788822-------257886
Q gi|254781074|r 127 VLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDVLDHKRHLVLKAAHPSPL-------SASHGF 199 (227)
Q Consensus 127 ~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~i~~~~~~il~~~HPSPl-------s~~~gF 199 (227)
+|||++|+++||+++|||+||+.+|++|+++++++||||||++||++++.|+..+|+||+++||||| ||+|||
T Consensus 80 ~LTv~~g~~~SH~~~gWe~ft~~ii~~l~~~~~~ivf~LwG~~A~~~~~~i~~~~h~il~~~HPSpls~~~~~~sa~~~F 159 (184)
T 2j8x_A 80 ILTVQKGKPGSHADIGWAWFTDHVISLLSERLKACVFMLWGAKAGDKASLINSKKHLVLTSQHPSPLAQNSTRKSAQQKF 159 (184)
T ss_dssp SCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCSSCEEEEESHHHHGGGGGSCTTTSEEEEECCSSGGGGGCCSSCSSCCS
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 78873799998555581889999999998146885999810345566653257897699767999511356654224898
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 2787089999999987889746508
Q gi|254781074|r 200 FGCRHFSKANRYLQEHGKTTVNWQI 224 (227)
Q Consensus 200 ~~~~~F~~~N~~L~~~~~~~IdW~l 224 (227)
+||+||++||++|+++|++||||+|
T Consensus 160 ~~~~~F~~~N~~L~~~~~~pIdW~l 184 (184)
T 2j8x_A 160 LGNNHFVLANNFLREKGLGEIDWRL 184 (184)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCCCCC
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 7888689999999987999923729
No 6
>>3cxm_A Uracil-DNA glycosylase; base excision repair, BER, DNA damage repair, MSGPP, SGPP, hydrolase, 5-bromouracil, structural genomics; 1.50A {Leishmania naiffi} (A:83-268)
Probab=100.00 E-value=0 Score=503.50 Aligned_cols=179 Identities=53% Similarity=1.003 Sum_probs=173.2
Q ss_pred HHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCH
Q ss_conf 9984299861779998118887752000710003479863046999999999741-888877401243220896886010
Q gi|254781074|r 49 RAFDITPFNKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAV 127 (227)
Q Consensus 49 ~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~ 127 (227)
|||++||+++|||||+||||||++|+|+||||||++++++|+|||||||||++|+ ++..|.+|||++||+||||||||+
T Consensus 1 raf~~~~~~~vKVVIlGQDPY~~~~~A~GlaFs~~~~~~~p~SL~NI~keL~~~~~~~~~p~~g~L~~Wa~QGVLLLNt~ 80 (186)
T 3cxm_A 1 NAFNSCPFRGLKVVLLGQDPYHDLHQAHGLCFSVLPEVPLPPSLRNIYKELTTDIAGFQAPKHGYLQSWSEQGMLMLNAT 80 (186)
T ss_dssp HHHHTSCSTTCCEEEEESSCCCSTTTCCSSTTCCCTTSCCCHHHHHHHHHHHHHSTTCCCCSSCCCHHHHTTTEEEEESS
T ss_pred HHHHCCCHHHCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCEEEEEEE
T ss_conf 98733998894799984479988520024311356777789429999999997528788999876111520987999624
Q ss_pred HCCCCCCCHHHH-HCCHHHHHHHHHHHHHCCC-CCEEEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHH
Q ss_conf 112368604454-3259999999999996178-98799997532333442057666079984788822257886278708
Q gi|254781074|r 128 LTVEEGRAASHR-GRGWEQFTDSVIDLISNNH-QNIVFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHF 205 (227)
Q Consensus 128 LTv~~g~~~SH~-~~gW~~ft~~ii~~l~~~~-~~vVfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F 205 (227)
|||++|+++||+ .+||++||+.+|++|++++ +++||||||++||++.+.|+..+|+||+++||||||++|||+||+||
T Consensus 81 LTv~~g~~~sH~~~~gWe~ft~~ii~~l~~~~~~~iVf~LwG~~A~~~~~~i~~~~~~vl~~~HPSpls~~~~F~~~~~F 160 (186)
T 3cxm_A 81 LTVEAHKANSHSKTSGWAAFTDAVIQHLSQHHPNRLVFLLWGGYAQQKKRLIDANRHVVLENVHPSPLSANRGWFGCRCF 160 (186)
T ss_dssp CCEETTCTTTTTTTSCHHHHHHHHHHHHHHHCSSCCEEEEESHHHHGGGGGSCTTTSEEEEECCSSHHHHTTTTTTCCHH
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHH
T ss_conf 78888976533344058999999999985157786699984666788986089878779973799962446688788879
Q ss_pred HHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 9999999987889746508898
Q gi|254781074|r 206 SKANRYLQEHGKTTVNWQIPLS 227 (227)
Q Consensus 206 ~~~N~~L~~~~~~~IdW~lp~~ 227 (227)
++||++|+++|++||||+||..
T Consensus 161 ~~~N~~L~~~~~~~IdW~l~~~ 182 (186)
T 3cxm_A 161 SACNEALQRMSHLPMHWQLPLN 182 (186)
T ss_dssp HHHHHHHHHTTCCCCCCCCCSS
T ss_pred HHHHHHHHHCCCCCEECCCCCC
T ss_conf 9999999987999872318898
No 7
>>1udg_A Uracil-DNA glycosylase; hydrolase; 1.75A {Herpes simplex virus} (A:70-244)
Probab=100.00 E-value=0 Score=493.36 Aligned_cols=174 Identities=44% Similarity=0.743 Sum_probs=167.9
Q ss_pred HHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCH
Q ss_conf 9984299861779998118887752000710003479863046999999999741-888877401243220896886010
Q gi|254781074|r 49 RAFDITPFNKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAV 127 (227)
Q Consensus 49 ~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~ 127 (227)
+|+++||+++|||||+||||||++|+|+||||||+.++++|||||||||||.+|+ ++..+++|||++||+||||||||+
T Consensus 1 a~~~~~p~~~vkVVIlGQDPY~~~~~A~GlaFsv~~~~~~p~SL~NI~kel~~~~~~~~~~~~g~L~~wakQGVLLLNt~ 80 (175)
T 1udg_A 1 SWTRYCTPDEVRVVIIGQDPYHHPGQAHGLAFSVRANVPPPPSLRNVLAAVKNCYPEARMSGHGCLEKWARDGVLLLNTT 80 (175)
T ss_dssp THHHHSCGGGCCEEEEECSCCCSTTTCSSSSSCCCTTSCCCHHHHHHHHHHHHHCTTCCCCSCCCCHHHHHTTEEEEESS
T ss_pred HHHHCCCHHHCEEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEEEE
T ss_conf 99876575334699996158876640333331367641323778999999975347777777887777852777877504
Q ss_pred HCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHH
Q ss_conf 11236860445432599999999999961789879999753233344205766607998478882225788627870899
Q gi|254781074|r 128 LTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSK 207 (227)
Q Consensus 128 LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~ 207 (227)
|||++|+++||+++||++||+.+|++|+++++++||||||++||+++..+. .+|+||+++|||||| ++||+||+||++
T Consensus 81 LTv~~g~~~SH~~~gWe~ft~~ii~~l~~~~~~vvf~LwG~~A~~~~~~~~-~~h~il~~~HPSpls-~~~F~~~~~F~~ 158 (175)
T 1udg_A 81 LTVKRGAAASHSRIGWDRFVGGVIRRLAARRPGLVFMLWGTHAQNAIRPDP-RVHCVLKFSHPSPLS-KVPFGTCQHFLV 158 (175)
T ss_dssp CCEETTBTTTTTTSSHHHHHHHHHHHHHHHCSSCEEEEESHHHHHHCCCCT-TTSEEEEECCSSTTS-SSCGGGCCHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCCC-CCCEEEEECCCCHHH-CCCCCCCCHHHH
T ss_conf 888725457764210999999999999728898699973466765620389-998699878998454-369899977999
Q ss_pred HHHHHHHCCCCCCCCCC
Q ss_conf 99999987889746508
Q gi|254781074|r 208 ANRYLQEHGKTTVNWQI 224 (227)
Q Consensus 208 ~N~~L~~~~~~~IdW~l 224 (227)
||++|+++|++||||+|
T Consensus 159 ~N~~L~~~~~~pIdW~l 175 (175)
T 1udg_A 159 ANRYLETRSISPIDWSV 175 (175)
T ss_dssp HHHHHHTTTCCCCCCCC
T ss_pred HHHHHHHCCCCCCCCCC
T ss_conf 99999987999945849
No 8
>>2owr_A UDG, uracil-DNA glycosylase; uracil-DNA glycosylase fold in the core: 3 layers (A/B/A); HET: EPE; 2.30A {Vaccinia virus} PDB: 2owq_A (A:48-218)
Probab=100.00 E-value=0 Score=452.37 Aligned_cols=169 Identities=19% Similarity=0.344 Sum_probs=158.2
Q ss_pred HHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEEC
Q ss_conf 99999842998617799981188877520007100034798630469999999997418888774012432208968860
Q gi|254781074|r 46 HYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLN 125 (227)
Q Consensus 46 ~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLN 125 (227)
+||+||+ ||+++|||||+||||||+ +|+||||||+. ++|||||||||||++|++. .+.+|||+.|| |||||||
T Consensus 1 qiF~af~-~p~~~vkVVIlGQDPY~~--~A~GLaFSv~~--~~p~sL~nI~kel~~~~~~-~~~~g~l~~wa-qgVLLLN 73 (171)
T 2owr_A 1 KFFIQLK-QPLRNKRVCVCGIDPYPK--DGTGVPFESPN--FTKKSIKEIASSISRLTGV-IDYKGYNLNII-DGVIPWN 73 (171)
T ss_dssp GTTGGGG-SCSTTCCEEEEESSCCSS--CCCSSTTCCTT--SCCHHHHHHHHHHHHHHCC-CCCSEECGGGS-TTEEEEE
T ss_pred HHHHHHC-CCHHHCEEEEEECCCCCC--CCCCCCCCCCC--CCCHHHHHHHHHHHHHCCC-CCCCCCCHHHH-CCCEEHH
T ss_conf 9999964-998894699984579998--66670225778--8865899999997760398-88888785786-2400351
Q ss_pred CHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHH
Q ss_conf 10112368604454325999999999999617898799997532333442057666079984788822257886278708
Q gi|254781074|r 126 AVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHF 205 (227)
Q Consensus 126 t~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F 205 (227)
|+|||++|+++||. +|||+||+.+|++|+++ +++||||||++||+++..|+..+|+|+ ||||+|++|||+||+||
T Consensus 74 ~~LTv~~g~~~sH~-~gWe~ft~~ii~~l~~~-~~ivf~LwG~~A~~~~~~i~~~~~~i~---hpsP~s~~r~F~~s~~F 148 (171)
T 2owr_A 74 YYLSCKLGETKSHA-IYWDKISKLLLQHITKH-VSVLYCLGKTDFSNIRAKLESPVTTIV---GYHPAARDRQFEKDRSF 148 (171)
T ss_dssp SSSCEETTCTTTTH-HHHHHHHHHHHHHHTTT-CSEEEEECHHHHHHHHHHCSCCCEEEE---ECCTTC----CCCCCCC
T ss_pred HHEEECCCCCCCHH-HHHHHHHHHHHHHHHCC-CCEEEEEECHHHHHHHCCCCCCEEEEE---CCCCCCCCCCCCCCCHH
T ss_conf 10332389876025-45999999999997166-973999852787864415799969996---88886556799999648
Q ss_pred HHHHHHHHHCCCCCCCCCCCC
Q ss_conf 999999998788974650889
Q gi|254781074|r 206 SKANRYLQEHGKTTVNWQIPL 226 (227)
Q Consensus 206 ~~~N~~L~~~~~~~IdW~lp~ 226 (227)
++||++|+++|++||||+|++
T Consensus 149 ~k~N~~L~~~~~~~IdW~lg~ 169 (171)
T 2owr_A 149 EIINVLLELDNKAPINWAQGF 169 (171)
T ss_dssp HHHHHHHHTTTSCCCCGGGGE
T ss_pred HHHHHHHHHCCCCCEECCCCC
T ss_conf 999999998699980588888
No 9
>>2c2q_A G/U mismatch-specific DNA glycosylase; radiation resistance, DNA repair enzymes, uracil-DNA glycosylase, MUG, hydrolase; 1.7A {Deinococcus radiodurans} PDB: 2c2p_A (A:)
Probab=96.21 E-value=0.028 Score=34.49 Aligned_cols=130 Identities=9% Similarity=-0.026 Sum_probs=79.6
Q ss_pred HHHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCCCCCC
Q ss_conf 86177999811888775200071000347986304699999999974188887740124322089688601011236860
Q gi|254781074|r 56 FNKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRA 135 (227)
Q Consensus 56 ~~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~ 135 (227)
..+.+|+||||.|=.. +...|..|+-+.+. =|+.++.....+... .--+.......||-+.|.+=....+..
T Consensus 23 ~~~a~iliiG~aPg~~-~~~~G~pf~g~sg~----~l~~l~~~g~~~~~~---~~~~~~~l~~~~v~it~~vk~~~~~~~ 94 (199)
T 2c2q_A 23 QPGLTLVLVGTAPSGI-SARARAYYANPENK----FWRTLHAVGLTPRQL---VPQEYATLPQYGLGLTDVAKRHSGVAA 94 (199)
T ss_dssp CTTCSEEEEESCCCHH-HHHHTSSSCSTTCC----HHHHHHHTTSSSSCC---CGGGGGGGGGGTEEEEESCCSCCSCGG
T ss_pred CCCCCEEEEECCCCHH-HHHCCCCCCCCCCH----HHHHHHHHHCCCCCC---CHHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 9998489984697987-99749875686207----899998851688777---866623311246135413565688878
Q ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCC---------------CCCCCEEEEECCCCHHHCCC
Q ss_conf 445432599999999999961789879999753233344205---------------76660799847888222578
Q gi|254781074|r 136 ASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDVL---------------DHKRHLVLKAAHPSPLSASH 197 (227)
Q Consensus 136 ~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~i---------------~~~~~~il~~~HPSPls~~~ 197 (227)
.....---.++-...|+.+ ++.+.++.|+.|-+..-.. ....-.++-..||||+.+..
T Consensus 95 ~~~~~e~~~~~L~~ei~~~----~P~iiv~lG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~hpS~~~~~~ 167 (199)
T 2c2q_A 95 ALPGEAWRPDELRRKVEHY----RPRIVAFTSKRGASETLGVPTGKLPYGPQPQPLDWPAETELWVLPSTSPLGHNH 167 (199)
T ss_dssp GSCGGGCCHHHHHHHHHHH----CCSEEEESSHHHHHHHHCSCGGGCCSEECCCCSSCCTTCEEEECCCCSGGGTTT
T ss_pred CCCHHHHHHHHHHHHHHHH----CCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHCC
T ss_conf 8756666676799999960----996899817799999853564434334332002356787445643888587073
No 10
>>1mug_A Protein (G:T/U specific DNA glycosylase); hydrolase; 1.80A {Escherichia coli} (A:)
Probab=96.04 E-value=0.11 Score=30.88 Aligned_cols=127 Identities=16% Similarity=0.126 Sum_probs=76.1
Q ss_pred HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC--CHHHHHHCCCEEEECCHHCCCCCC
Q ss_conf 617799981188877520007100034798630469999999997418888774--012432208968860101123686
Q gi|254781074|r 57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTH--GFLEHWGHEGVLLLNAVLTVEEGR 134 (227)
Q Consensus 57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~--g~L~~Wa~QGVLLLNt~LTv~~g~ 134 (227)
.+.||+|+|+.|=.. +...|..|+-+.+. |.++..+ .+...... -+......++|.+.|++=......
T Consensus 8 ~~a~ilivG~~Pg~~-~~~~g~~f~g~g~~-----l~~~l~~----~~~~~~~~~~~~~~~l~~~~i~~~~~v~~~~~~~ 77 (168)
T 1mug_A 8 PGLRVVFCGINPGLS-SAGTGFPFAHPANR-----FWKVIYQ----AGFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQA 77 (168)
T ss_dssp TTCSEEEEESSCCHH-HHHHSSTTCSTTCC-----HHHHHHH----TTSSSSCCCGGGGGGGGGGTEEEEESCCCCCSSG
T ss_pred CCCCEEEEECCCCHH-HHHCCCCCCCCHHH-----HHHHHHH----HCCCCCCCCHHHHHHHHHCCEEEECCCCCCCCCC
T ss_conf 999889982798965-88559987786188-----9999999----6599865567776553323667723767788888
Q ss_pred --CHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCC----CCCC------CEEEEECCCCHHHCCC
Q ss_conf --0445432599999999999961789879999753233344205----7666------0799847888222578
Q gi|254781074|r 135 --AASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDVL----DHKR------HLVLKAAHPSPLSASH 197 (227)
Q Consensus 135 --~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~i----~~~~------~~il~~~HPSPls~~~ 197 (227)
+.... .+.....+.+.|...++. |.++.|+.|.+..... ...+ .-+..-+||||+.+.+
T Consensus 78 ~~~~~~e---~~~c~~~l~~ei~~~~P~-iiv~lG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~sp~~~~~ 148 (168)
T 1mug_A 78 NEVSKQE---LHAGGRKLIEKIEDYQPQ-ALAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSRVS 148 (168)
T ss_dssp GGSCHHH---HHHHHHHHHHHHHHHCCS-EEEEECHHHHHHHHTCCSCCSEEEEEEETTEEEEEECCCSTTSCCC
T ss_pred CCCCHHH---HHHHHHHHHHHHHHHCCC-EEEECCHHHHHHHHCCCCCCCCCEEECCCCCCEEEECCCCHHHHCC
T ss_conf 9989999---999899999999980988-8998595999998477766445400025897779931898778289
No 11
>>1wyw_A TDG, G/T mismatch-specific thymine DNA glycosylase; hydrolase; 2.10A {Homo sapiens} (A:1-199)
Probab=95.47 E-value=0.15 Score=29.97 Aligned_cols=148 Identities=13% Similarity=0.054 Sum_probs=87.9
Q ss_pred HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCCCC--C
Q ss_conf 61779998118887752000710003479863046999999999741888877401243220896886010112368--6
Q gi|254781074|r 57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVEEG--R 134 (227)
Q Consensus 57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g--~ 134 (227)
.+.+|+|||+.|=.. +...|..|+-+.+. =|++++..+..+.. .....+-..--..||-+.|.+-....+ +
T Consensus 21 ~~a~iliVG~~Pg~~-~~~~g~~f~g~~g~----~l~~~l~~~g~~~~--~~~~~~~~~l~~~~i~~t~~v~~~~~~~~~ 93 (199)
T 1wyw_A 21 FNLDIVIIGINPGLM-AAYKGHHYPGPGNH----FWKCLFMSGLSEVQ--LNHMDDHTLPGKYGIGFTNMVERTTPGSKD 93 (199)
T ss_dssp SSCSEEEEESSCCHH-HHHHTSSSCSSSBC----HHHHHHHTTSSSSC--CCGGGGGGHHHHHSEEEEESCCSCCSCGGG
T ss_pred CCCCEEEEECCCCHH-HHHCCCCCCCCHHH----HHHHHHHHHCCCCC--CCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 998689982697977-89649986580689----99999997378755--787788777764044544431467888899
Q ss_pred CHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHC----C--------------CCCCCEEEEECCCCHHHCC
Q ss_conf 044543259999999999996178987999975323334420----5--------------7666079984788822257
Q gi|254781074|r 135 AASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDV----L--------------DHKRHLVLKAAHPSPLSAS 196 (227)
Q Consensus 135 ~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~----i--------------~~~~~~il~~~HPSPls~~ 196 (227)
+..+.---+.++....|+.+ ++. |.++.|+.|-+.... + ....-.++-..||||+.+.
T Consensus 94 ~~~~e~~~~~~~L~~ei~~~---~P~-~i~~lG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hpS~l~~~ 169 (199)
T 1wyw_A 94 LSSKEFREGGRILVQKLQKY---QPR-IAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSARCAQ 169 (199)
T ss_dssp CCHHHHHHHHHHHHHHHHHH---CCS-EEEEESHHHHHHHHHHHTCCCCSSCCSEECSCCSTTSCCEEEEECCCBTTCSS
T ss_pred CCHHHHHHHHHHHHHHHHHH---CCC-EEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHC
T ss_conf 98899998689999999981---998-89663999999997400266642132355643358887459973897088706
Q ss_pred CCCCCCC--HHHHHHHHHHHC
Q ss_conf 8862787--089999999987
Q gi|254781074|r 197 HGFFGCR--HFSKANRYLQEH 215 (227)
Q Consensus 197 ~gF~~~~--~F~~~N~~L~~~ 215 (227)
..+..-+ -|...=+++...
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~l 190 (199)
T 1wyw_A 170 FPRAQDKVHYYIKLKDLRDQL 190 (199)
T ss_dssp CCSGGGTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
T ss_conf 652699999999999999998
No 12
>>2d3y_A Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster, thermophIle, structural genomics, NPPSFA; HET: DU; 1.55A {Thermus thermophilus HB8} PDB: 2ddg_A* 2dem_A* 2dp6_A* (A:)
Probab=93.55 E-value=0.28 Score=28.32 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=65.3
Q ss_pred HHCEEEEEECCCCCCCCCCCCCEEECC-CCCCCHHHHHHHHHHHHHHCCCCCCCC--CHHHHHHCCCEEEECCHHC-CCC
Q ss_conf 617799981188877520007100034-798630469999999997418888774--0124322089688601011-236
Q gi|254781074|r 57 NKVKVVILGQDPYHNYGQAHGLCFSVP-LGIRIPPSLVNVYKELQEDVNFIPPTH--GFLEHWGHEGVLLLNAVLT-VEE 132 (227)
Q Consensus 57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~-~~~~~p~SLrNI~Kel~~d~~~~~~~~--g~L~~Wa~QGVLLLNt~LT-v~~ 132 (227)
.+.+|+++|+.|=...+..+|..|+-. .+ .=|+++..+ .|.....- -+...| ..++...|.+=- ...
T Consensus 49 ~~a~vl~VgeaPg~~~e~~~G~pF~g~~~g----~~l~~~l~~----~Gl~~~~~~~~~~~~~-~~~~~~t~~vk~~~~~ 119 (219)
T 2d3y_A 49 PEARILLFGLAPGAHGSNRTGRPFTGDASG----AFLYPLLHE----AGLSSKPESLPGDDLR-LYGVYLTAAVRCAPPK 119 (219)
T ss_dssp TTCSEEEEESCCCTTTHHHHSSTTTTSHHH----HHHHHHHHH----TTCBSCSCCCTTSCCC-BSSEEEEESCCSCCGG
T ss_pred CCCCEEEECCCCCCCCCCCCCCCEECCHHH----HHHHHHHHH----HCCCCCCHHCCCCCCC-CCCEEECCCCCCCCCC
T ss_conf 774789960542001023478641034037----788888998----4676430100121010-1120101553236766
Q ss_pred CCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHC--------CCC---------CCCEEEEECCCCHHHC
Q ss_conf 86044543259999999999996178987999975323334420--------576---------6607998478882225
Q gi|254781074|r 133 GRAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDV--------LDH---------KRHLVLKAAHPSPLSA 195 (227)
Q Consensus 133 g~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~--------i~~---------~~~~il~~~HPSPls~ 195 (227)
..+....-.-|.++...-|+.+ .++-|.++.|+.|-+..-- +.. ..-.++-+.|||++..
T Consensus 120 r~p~~~ei~~c~~~L~~ei~ll---~~P~iIv~lG~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~hPs~l~~ 196 (219)
T 2d3y_A 120 NKPTPEELRACARWTEVELGLL---PEVRVYVALGRIALEALLAHFGLRKSAHPFRHGAHYPLPGGRHLLASYHVSRQNT 196 (219)
T ss_dssp GCCCHHHHHHHHHHHHHHHHTC---TTCCEEEEESHHHHHHHHHHHTCCTTTSCCCTTCEEEETTTEEEEEECCCSHHHH
T ss_pred CCCCCHHHHHHCCHHHHHHHHH---CCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCC
T ss_conf 6897088888486679999984---2861454303899998776516521223420221773799938999868886665
Q ss_pred C
Q ss_conf 7
Q gi|254781074|r 196 S 196 (227)
Q Consensus 196 ~ 196 (227)
+
T Consensus 197 ~ 197 (219)
T 2d3y_A 197 Q 197 (219)
T ss_dssp H
T ss_pred C
T ss_conf 8
No 13
>>1ui0_A Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster, thermophIle, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus} (A:)
Probab=91.92 E-value=0.36 Score=27.67 Aligned_cols=137 Identities=17% Similarity=0.079 Sum_probs=71.3
Q ss_pred HHHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCC--CC
Q ss_conf 8617799981188877520007100034798630469999999997418888774012432208968860101123--68
Q gi|254781074|r 56 FNKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVE--EG 133 (227)
Q Consensus 56 ~~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~--~g 133 (227)
..+-||+||||.|=.. ...+|..|+-..+. =|++++.++ |+.. +-|.+.|.+=-.. ..
T Consensus 31 ~~~a~iliIg~~P~~~-~~~~G~~f~g~aG~----~L~~~l~~~----gl~~-----------~~vyit~lvkc~p~~~~ 90 (205)
T 1ui0_A 31 NPDAKLMIVGEGPGEE-EDKTGRPFVGKAGQ----LLNRILEAA----GIPR-----------EEVYITNIVKCRPPQNR 90 (205)
T ss_dssp CTTCSEEEEESCCCHH-HHHHSCSSCSHHHH----HHHHHHHHH----TCCG-----------GGSEEEESCSSCCGGGC
T ss_pred CCCCCEEEEECCHHHH-HHHHHHCCCCCHHH----HHHHHHHHH----CCCH-----------HHEEEEEEEEECCCCCC
T ss_conf 9999999997821454-44444111535043----688889983----9889-----------99588614646033456
Q ss_pred CCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCC------------CCCCCEEEEECCCCHHHCCCCCCC
Q ss_conf 60445432599999999999961789879999753233344205------------766607998478882225788627
Q gi|254781074|r 134 RAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDVL------------DHKRHLVLKAAHPSPLSASHGFFG 201 (227)
Q Consensus 134 ~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~i------------~~~~~~il~~~HPSPls~~~gF~~ 201 (227)
.+.... .+......++...+.-++-+.++.|+.|.+..--- +.....++-..|||++.....-..
T Consensus 91 ~~~~~e---i~~c~~~~L~~ei~l~~P~~ii~lG~~a~~~ll~~~~~~~~~~g~~~~~~~~~~~~~~hPS~l~~~~~~~~ 167 (205)
T 1ui0_A 91 APLPDE---AKICTDKWLLKQIELIAPQIIVPLGAVAAEFFLGEKVSITKVRGKWYEWHGIKVFPMFHPAYLLRNPSRAP 167 (205)
T ss_dssp CCCHHH---HHHHHHHTHHHHHHHHCCSEEEEBSHHHHHHHHTSCCCHHHHTTCCEEETTEEECCBCCHHHHHHSCCCST
T ss_pred CCCHHH---HHHHHHHHHHHHHHHCCCCEEEECCCHHEEHHHHCCCCHHHHCCCEEECCCCEEEEECCCHHHHHCCCCCC
T ss_conf 798599---99999999999998548848995250100011310352012148348628977999828689876925343
Q ss_pred C-------CHHHHHHHHHHHC
Q ss_conf 8-------7089999999987
Q gi|254781074|r 202 C-------RHFSKANRYLQEH 215 (227)
Q Consensus 202 ~-------~~F~~~N~~L~~~ 215 (227)
- ..+.++.+.|.+.
T Consensus 168 p~~~~~~~~~L~~~~~~l~~~ 188 (205)
T 1ui0_A 168 GSPKHLTWLDIQEVKRALDAL 188 (205)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHCC
T ss_conf 046789999999999999726
No 14
>>3ikb_A Uncharacterized conserved protein; APC63946, streptococcus mutans UA159, structural genomics, PSI-2, protein structure initiative; HET: FLC; 1.67A {Streptococcus mutans} (A:34-198)
Probab=89.85 E-value=0.61 Score=26.22 Aligned_cols=121 Identities=17% Similarity=0.076 Sum_probs=66.2
Q ss_pred HHHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCCC-C-
Q ss_conf 86177999811888775200071000347986304699999999974188887740124322089688601011236-8-
Q gi|254781074|r 56 FNKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVEE-G- 133 (227)
Q Consensus 56 ~~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~-g- 133 (227)
+.+.+|+|+||.|=.. +..+|..|+-..|. =|+..+ +... . ..-.++.|.+-|.+--... +
T Consensus 2 ~~~a~imiVgeaPg~~-e~~~G~pF~G~aG~----~L~~~l-------~~~~--~---~~~~~~~vyit~~vkc~p~~nr 64 (165)
T 3ikb_A 2 PKTARINIVGQAPGIK-AQESRLYWNDKSGD----RLREWX-------GVDY--D---TFYHSGYFAVIPXDFYYPGKGK 64 (165)
T ss_dssp CTTCCEEEECSCCCHH-HHHHCCSSCSHHHH----HHHHHH-------TCCH--H---HHHHSSCEEECCSCSSCCCBCS
T ss_pred CCCCCEEEECCCCCHH-HHHHCCCCCCHHHH----HHHHHH-------CCHH--H---CCCCCCCEEEEEEEECCCCCCC
T ss_conf 9998689975898666-65308977371789----999985-------4304--3---1356554478875323899888
Q ss_pred CCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCC-------------CCCCEEEEECCCCHHHC
Q ss_conf 604454325999999999999617898799997532333442057-------------66607998478882225
Q gi|254781074|r 134 RAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDVLD-------------HKRHLVLKAAHPSPLSA 195 (227)
Q Consensus 134 ~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~i~-------------~~~~~il~~~HPSPls~ 195 (227)
.+....-..+.++-..-|.. +--++.|.++.|+.|.+..--.. .....++-+.|||++..
T Consensus 65 ~p~~~e~~~c~~~L~~ei~~--~lv~P~~Iv~lG~~A~~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~HPs~llr 137 (165)
T 3ikb_A 65 SGDLPPRKGFAQKWHQPILD--LLPDIQLTILIGNYAQKYYLHQKSSVKLTDTVAHYKKYLPDYFPLVHPSPRNQ 137 (165)
T ss_dssp SSBCCCCTTHHHHHHHHHHT--TCTTCCEEEEESHHHHHHHTTCCTTSCHHHHHHTGGGGTTTEEEECCCCGGGH
T ss_pred CCCCCCHHHHHHHHHHHHHH--HCCCCCEEEEECHHHHHHHCCCCCCCCCEEEEECCHHCCCCEEEECCCCCCCC
T ss_conf 99985178999999999998--55897599986899999870866678700014403220898798738984660
No 15
>>1vk2_A Uracil-DNA glycosylase TM0511; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics, hydrolase; 1.90A {Thermotoga maritima} (A:)
Probab=89.58 E-value=0.63 Score=26.12 Aligned_cols=117 Identities=21% Similarity=0.243 Sum_probs=66.4
Q ss_pred HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCCC--CC
Q ss_conf 6177999811888775200071000347986304699999999974188887740124322089688601011236--86
Q gi|254781074|r 57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVEE--GR 134 (227)
Q Consensus 57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~--g~ 134 (227)
.+.||+||||+|=.. ...+|..|+-..+. =|++++.++ |+. .+.|.+.|.+--... ..
T Consensus 49 ~~a~il~ig~~Pg~~-~~~~G~~f~g~sG~----~L~~~L~~~----gl~-----------~~~~~itn~vk~~~~~~~~ 108 (204)
T 1vk2_A 49 LDTRIVFVGEGPGEE-EDKTGRPFVGRAGX----LLTELLRES----GIR-----------REDVYICNVVKCRPPNNRT 108 (204)
T ss_dssp TTCSEEEEESCCCHH-HHHHTCSSCSHHHH----HHHHHHHHT----TCC-----------GGGSEEEESCSSCCGGGCC
T ss_pred CCCCEEEEECCHHHH-HHHHCCEEHHHHHH----HHHHHHHHH----CCC-----------CCCEEEEEEECCCCCCCCC
T ss_conf 987889995433566-78748760663688----999998762----023-----------0364786443144764445
Q ss_pred CHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH-HHCCC------------C-CCCEEEEECCCCHHHCCC
Q ss_conf 044543259999999999996178987999975323334-42057------------6-660799847888222578
Q gi|254781074|r 135 AASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKK-QDVLD------------H-KRHLVLKAAHPSPLSASH 197 (227)
Q Consensus 135 ~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~-~~~i~------------~-~~~~il~~~HPSPls~~~ 197 (227)
+....--.+.++....|+.+ ++-|.++.|..|.+. ...-+ . ..-.++-+.|||++..+.
T Consensus 109 ~~~~e~~~c~~~L~~ei~~i----~P~~iv~lG~~a~~~~l~~~~~~~~~~~G~~~~~~~~~~v~~~~hPs~l~~~~ 181 (204)
T 1vk2_A 109 PTPEEQAACGHFLLAQIEII----NPDVIVALGATALSFFVDGKKVSITKVRGNPIDWLGGKKVIPTFHPSYLLRNR 181 (204)
T ss_dssp CCHHHHHHHHHHHHHHHHHH----CCSEEEEESHHHHHHTTTTCCCCHHHHTTCCEECGGGCEEEEECCHHHHHHCC
T ss_pred CCHHHHHHHCHHHHHHHHCC----CCCEEEECCHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHCC
T ss_conf 67099997452235555404----87317730658899986245665431367358868998799984977987793
No 16
>>1oe4_A SMUG1, single-strand selective monofunctional uracil DNA glycosylase; hydrolase, hydrolase/complex, SMUG1; HET: 3DR; 2.0A {Xenopus laevis} (A:)
Probab=83.68 E-value=3.4 Score=21.61 Aligned_cols=150 Identities=13% Similarity=0.019 Sum_probs=74.1
Q ss_pred CHHHCEEEEEECCCCCCCCCCCCCEEECCCC---------CC------CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHC-
Q ss_conf 9861779998118887752000710003479---------86------3046999999999741888877401243220-
Q gi|254781074|r 55 PFNKVKVVILGQDPYHNYGQAHGLCFSVPLG---------IR------IPPSLVNVYKELQEDVNFIPPTHGFLEHWGH- 118 (227)
Q Consensus 55 p~~~vKVVIlGQDPY~~~g~A~GLaFsv~~~---------~~------~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~- 118 (227)
.-..-++.++|..|=......+|+.|+-... -. .|. -+|-.....+.-+..-.|..|.+
T Consensus 50 ~~~~~~~~l~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~igeaP~-----~~ed~~g~pf~g~sG~~L~~~l~~ 124 (247)
T 1oe4_A 50 CKSKKEVLFLGMNPGPFGMAQTGVPFGEVNHVRDWLQIEGPVSKPEVEHPK-----RRIRGFECPQSEVSGARFWSLFKS 124 (247)
T ss_dssp CSSCCSEEEEESSCCTTTHHHHSSTTCCHHHHHHTTCCCCCCCCCSSCCTT-----SCCCGGGCCSCCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 289998899842898777864087858879998785367746789644777-----765354664256529889999998
Q ss_pred ---------CCEEEECCHHCC--C-CCC--------CHHHHHC--CHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHC
Q ss_conf ---------896886010112--3-686--------0445432--59999999999996178987999975323334420
Q gi|254781074|r 119 ---------EGVLLLNAVLTV--E-EGR--------AASHRGR--GWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDV 176 (227)
Q Consensus 119 ---------QGVLLLNt~LTv--~-~g~--------~~SH~~~--gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~ 176 (227)
+.|.+-|.+=-. . .|+ ..-.... -..+|....|+.+ ++-|.++.|+.|.+...-
T Consensus 125 ~gl~~~~f~~~~yitn~v~c~p~~~~~k~~~~~~~nr~p~~~e~~~C~~~L~~eI~l~----~P~iIv~lG~~a~~~ll~ 200 (247)
T 1oe4_A 125 LCGQPETFFKHCFVHNHCPLIFMNHSGKNLTPTDLPKAQRDTLLEICDEALCQAVRVL----GVKLVIGVGRFSEQRARK 200 (247)
T ss_dssp HHSSHHHHHTTEEEEESCCCEEECTTCCEECGGGSCHHHHHHHHHHHHHHHHHHHHHH----TCSEEEEESHHHHHHHHH
T ss_pred HCCCHHHHHHHHEEEECCCCEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHC----CCCEEEEECHHHHHHHHH
T ss_conf 7399889866340451377223288998688133789999999999999999999862----972899977899999999
Q ss_pred CC---CCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 57---66607998478882225788627870899999999878
Q gi|254781074|r 177 LD---HKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHG 216 (227)
Q Consensus 177 i~---~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~ 216 (227)
+. .....++-..|||+++.++ +-..-..+.+.|++.+
T Consensus 201 ~~~~~g~~i~v~~~~HPS~~~~~~---~~~~~~~~~~~l~~lk 240 (247)
T 1oe4_A 201 ALMAEGIDVTVKGIMHPSPRNPQA---NKGWEGIVRGQLLELG 240 (247)
T ss_dssp HHHHTTCSCEEEEECCCCTTCGGG---TTTHHHHHHHHHHHHT
T ss_pred HHCCCCCCCEEEECCCCCCCCHHH---CCCCHHHHHHHHHHCC
T ss_conf 851469983686558999988001---0583899999999877
No 17
>>3hrg_A Uncharacterized protein BT_3980 with actin-like ATPase fold; NP_812891.1, bacteroides thetaiotaomicron BT_3980; HET: MSE UNL; 1.85A {Bacteroides thetaiotaomicron vpi-5482} (A:1-75,A:137-143)
Probab=38.95 E-value=23 Score=16.50 Aligned_cols=25 Identities=28% Similarity=0.615 Sum_probs=18.9
Q ss_pred CCCCCEEEC----------------CCCCCCHHHHHHHHHH
Q ss_conf 000710003----------------4798630469999999
Q gi|254781074|r 74 QAHGLCFSV----------------PLGIRIPPSLVNVYKE 98 (227)
Q Consensus 74 ~A~GLaFsv----------------~~~~~~p~SLrNI~Ke 98 (227)
..+|||||+ +.+..+.+.||.-|||
T Consensus 18 s~~glSFSv~dp~~~~~l~y~py~v~~giSlaANLkeaF~e 58 (82)
T 3hrg_A 18 STDGFSFSIYNPINDNSQSLFEKEVDTSLSLTANLKNVFHE 58 (82)
T ss_dssp CTTCEEEEEEETTTTEEEEEEEECCCTTSCHHHHHHHHHHH
T ss_pred ECCEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 08928999987888825899832458768899999999874
No 18
>>1z40_A Apical membrane antigen 1 precursor; malaria vaccine candidate, PAN or apple domains, unknown function; 1.90A {Plasmodium falciparum 3D7} PDB: 2q8a_A 2q8b_A 2z8v_A 2z8w_A 1yxe_A (A:46-196)
Probab=26.22 E-value=46 Score=14.62 Aligned_cols=71 Identities=17% Similarity=0.128 Sum_probs=33.4
Q ss_pred CEEEEEEC------CCCCCCCC---CCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHC
Q ss_conf 77999811------88877520---0071000347986304699999999974188887740124322089688601011
Q gi|254781074|r 59 VKVVILGQ------DPYHNYGQ---AHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLT 129 (227)
Q Consensus 59 vKVVIlGQ------DPY~~~g~---A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LT 129 (227)
=|+|+|+| +|-++.++ --||||--....--|-|+.|.-..-++ +....+-.||..=|+ -++.+
T Consensus 6 GK~I~i~ns~~~FL~pV~t~~~~~k~GGfafP~t~~~iSPis~~~lk~~~k~--~~~i~~lndl~~Ca~------ha~~~ 77 (151)
T 1z40_A 6 GKGIIIENSNTTFLTPVATGNQYLKDGGFAFPPTEPLMSPMTLDEMRHFYKD--NKYVKNLDELTLCSR------HAGNM 77 (151)
T ss_dssp TEEEEETTCSCCTTSBCCC-----CCCCSBCCCCSSCCSSEEHHHHHHHTTT--CTTTTTSCHHHHHHH------HHHTS
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC--CCCCCCCCHHHHHHH------HHCCC
T ss_conf 6068953775121463445785332567468888875587787889876531--444324330878888------76244
Q ss_pred CCCCCCHH
Q ss_conf 23686044
Q gi|254781074|r 130 VEEGRAAS 137 (227)
Q Consensus 130 v~~g~~~S 137 (227)
|.....+|
T Consensus 78 vp~~d~ns 85 (151)
T 1z40_A 78 IPDNDKNS 85 (151)
T ss_dssp CSTTCTTC
T ss_pred CCCCCCCC
T ss_conf 75767554
Done!