HHsearch results for GI: 254781074 and protein with PDBid: 1oe4_A
>1oe4_A SMUG1, single-strand selective monofunctional uracil DNA glycosylase; hydrolase, hydrolase/complex, SMUG1; HET: 3DR; 2.0A {Xenopus laevis} SCOP: c.18.1.3 PDB: 1oe5_A* 1oe6_A*
Probab=96.72 E-value=0.021 Score=34.29 Aligned_cols=148 Identities=17% Similarity=0.150 Sum_probs=83.3
Q ss_pred CCHHHCEEEEEECCCCCCCCCCCCCEEECCC-------------------------CCC---CHHHHHHHHHHHHHHCCC
Q ss_conf 9986177999811888775200071000347-------------------------986---304699999999974188
Q gi|254781074|r 54 TPFNKVKVVILGQDPYHNYGQAHGLCFSVPL-------------------------GIR---IPPSLVNVYKELQEDVNF 105 (227)
Q Consensus 54 ~p~~~vKVVIlGQDPY~~~g~A~GLaFsv~~-------------------------~~~---~p~SLrNI~Kel~~d~~~ 105 (227)
+. ...||++||++|=|.-+--+|+.|.-.. +.. --.|=+-|...+++-++.
T Consensus 50 ~~-~~~~vl~lGmNPGp~Gm~qTGVPFgd~~~vr~~l~i~~~v~~P~~~HPKRpi~G~~c~r~EvSg~rlW~l~~~~~g~ 128 (247)
T 1oe4_A 50 CK-SKKEVLFLGMNPGPFGMAQTGVPFGEVNHVRDWLQIEGPVSKPEVEHPKRRIRGFECPQSEVSGARFWSLFKSLCGQ 128 (247)
T ss_dssp CS-SCCSEEEEESSCCTTTHHHHSSTTCCHHHHHHTTCCCCCCCCCSSCCTTSCCCGGGCCSCCHHHHHHHHHHHHHHSS
T ss_pred CC-CCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 18-99988998328987778641868588799987851667467885447677654657665565398899999988399
Q ss_pred CCCCCCHHHHHHCCCEEEECCH-HCC--CCCCCH-------H-HHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
Q ss_conf 8877401243220896886010-112--368604-------4-5432599999999999961789879999753233344
Q gi|254781074|r 106 IPPTHGFLEHWGHEGVLLLNAV-LTV--EEGRAA-------S-HRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQ 174 (227)
Q Consensus 106 ~~~~~g~L~~Wa~QGVLLLNt~-LTv--~~g~~~-------S-H~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~ 174 (227)
|.. .-+-+++.|.+ |.. +.|+.- + -..+ ++.-.+.+.+.|..-+.. +.+--|++|++..
T Consensus 129 --pe~------ff~~~fv~N~CPL~f~~~~GkN~TP~~l~~~e~~~l-~~~Cd~~L~~~v~~L~p~-~VVgVG~~Ae~ra 198 (247)
T 1oe4_A 129 --PET------FFKHCFVHNHCPLIFMNHSGKNLTPTDLPKAQRDTL-LEICDEALCQAVRVLGVK-LVIGVGRFSEQRA 198 (247)
T ss_dssp --HHH------HHTTEEEEESCCCEEECTTCCEECGGGSCHHHHHHH-HHHHHHHHHHHHHHHTCS-EEEEESHHHHHHH
T ss_pred --HHH------HHHHHEEEECCCCEECCCCCCCCCCHHCCHHHHHHH-HHHHHHHHHHHHHHCCCC-EEEEECHHHHHHH
T ss_conf --989------865342572377333188998688000588899999-999999999999861972-8999778999999
Q ss_pred HCC-C--CCCCEEEEECCCCHHH--CCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 205-7--6660799847888222--57886278708999999998788
Q gi|254781074|r 175 DVL-D--HKRHLVLKAAHPSPLS--ASHGFFGCRHFSKANRYLQEHGK 217 (227)
Q Consensus 175 ~~i-~--~~~~~il~~~HPSPls--~~~gF~~~~~F~~~N~~L~~~~~ 217 (227)
+.. . ...-.|..-.||||.| |+||+- .++...|+++|.
T Consensus 199 ~~al~~~g~~V~v~~i~HPSPasp~aN~~W~-----~~a~~~l~~~g~ 241 (247)
T 1oe4_A 199 RKALMAEGIDVTVKGIMHPSPRNPQANKGWE-----GIVRGQLLELGV 241 (247)
T ss_dssp HHHHHHTTCSCEEEEECCCCTTCGGGTTTHH-----HHHHHHHHHHTC
T ss_pred HHHHCCCCCCCEEEECCCCCCCCCHHCCCCH-----HHHHHHHHHCCC
T ss_conf 9986046998558645799998800005848-----999999998774