HHsearch results for GI: 254781074 and protein with PDBid: 1udg_A
>1udg_A Uracil-DNA glycosylase; hydrolase; 1.75A {Herpes simplex virus} SCOP: c.18.1.1 PDB: 1lau_E 1udh_A 1udi_E 2c53_A* 2c56_A*
Probab=100.00 E-value=0 Score=589.50 Aligned_cols=219 Identities=39% Similarity=0.666 Sum_probs=208.3
Q ss_pred CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEEC
Q ss_conf 68687338999888726589999999999999779808588769999984299861779998118887752000710003
Q gi|254781074|r 3 GVKIHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCFSV 82 (227)
Q Consensus 3 ~l~i~~sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFsv 82 (227)
.+.|+++|+++|.+|+.++|+.+|.++|.+++. +.+|||+.++|||||++||+++||||||||||||++|||+||||||
T Consensus 25 ~~~i~~sW~~~L~~e~~k~y~~~l~~~l~~~~~-~~~i~P~~~~iF~af~~~~~~~vKVVIlGQDPY~~~~~A~GLaFsv 103 (244)
T 1udg_A 25 VFLIDDAWRPLMEPELANPLTAHLLAEYNRRCQ-TEEVLPPREDVFSWTRYCTPDEVRVVIIGQDPYHHPGQAHGLAFSV 103 (244)
T ss_dssp HHTCCGGGHHHHHHHHTSHHHHHHHHHHHHHHH-HSCEESCTTTTTTHHHHSCGGGCCEEEEECSCCCSTTTCSSSSSCC
T ss_pred HCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCEEECCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCEEECC
T ss_conf 668986899999999754999999999999981-9958897299999884798668679998517999998607655136
Q ss_pred CCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 479863046999999999741-8888774012432208968860101123686044543259999999999996178987
Q gi|254781074|r 83 PLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNI 161 (227)
Q Consensus 83 ~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~v 161 (227)
+.++++|||||||||||++|+ ++..+.+|||++||+||||||||+|||++|+++||+++||++||+.+|++|+++++++
T Consensus 104 ~~~~~~ppSLrNI~kel~~d~~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gWe~ft~~ii~~l~~~~~~i 183 (244)
T 1udg_A 104 RANVPPPPSLRNVLAAVKNCYPEARMSGHGCLEKWARDGVLLLNTTLTVKRGAAASHSRIGWDRFVGGVIRRLAARRPGL 183 (244)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCTTCCCCSCCCCHHHHHTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEECEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 89999985699999999864378888887777778649899970658861577888788987999999999998368986
Q ss_pred EEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 999975323334420576660799847888222578862787089999999987889746508
Q gi|254781074|r 162 VFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQI 224 (227)
Q Consensus 162 VfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~l 224 (227)
||||||++||++.. ++..+|+||+++||||||+ +||+||+||++||++|+++|++||||+|
T Consensus 184 VfiLWG~~Aq~~~~-~~~~~h~Il~~~HPSPls~-~gF~gs~~F~k~N~~L~~~~~~pIdW~l 244 (244)
T 1udg_A 184 VFMLWGTHAQNAIR-PDPRVHCVLKFSHPSPLSK-VPFGTCQHFLVANRYLETRSISPIDWSV 244 (244)
T ss_dssp EEEEESHHHHHHCC-CCTTTSEEEEECCSSTTSS-SCGGGCCHHHHHHHHHHTTTCCCCCCCC
T ss_pred EEEEECHHHHHHCC-CCCCCCEEEEECCCCCCCC-CCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99996789885342-4788886998689882113-6899997689999999987999903739