HHsearch results for GI: 254781074 and protein with PDBid: 1vk2_A
>1vk2_A Uracil-DNA glycosylase TM0511; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics, hydrolase; 1.90A {Thermotoga maritima} SCOP: c.18.1.2 PDB: 1l9g_A
Probab=91.18 E-value=0.56 Score=25.51 Aligned_cols=116 Identities=22% Similarity=0.255 Sum_probs=66.3
Q ss_pred HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCC-CC-C
Q ss_conf 617799981188877520007100034798630469999999997418888774012432208968860101123-68-6
Q gi|254781074|r 57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVE-EG-R 134 (227)
Q Consensus 57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~-~g-~ 134 (227)
.+-||+|+|+.|-.. +..+|..|+-+.+ .-|+++..+ .+.. .+.|.+.|.+--.. .+ .
T Consensus 49 ~~a~imiVgeaPg~~-e~~~g~pf~g~sG----~ll~~~l~~----~gl~-----------~~~vyitn~vkc~pp~n~~ 108 (204)
T 1vk2_A 49 LDTRIVFVGEGPGEE-EDKTGRPFVGRAG----MLLTELLRE----SGIR-----------REDVYICNVVKCRPPNNRT 108 (204)
T ss_dssp TTCSEEEEESCCCHH-HHHHTCSSCSHHH----HHHHHHHHH----TTCC-----------GGGSEEEESCSSCCGGGCC
T ss_pred CCCCEEEEECCCCHH-HHHCCCCCCCCHH----HHHHHHHHH----HCCC-----------CCCEEEEEEEEECCCCCCC
T ss_conf 999999998997455-6052985456538----789988776----2457-----------0235797678760886789
Q ss_pred CH-HHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHC-----C--------C-CCCCEEEEECCCCHHHCCC
Q ss_conf 04-4543259999999999996178987999975323334420-----5--------7-6660799847888222578
Q gi|254781074|r 135 AA-SHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDV-----L--------D-HKRHLVLKAAHPSPLSASH 197 (227)
Q Consensus 135 ~~-SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~-----i--------~-~~~~~il~~~HPSPls~~~ 197 (227)
+. ....- ..++...-|+.+. +-|.++.|+.|.+..-. + + .....++-+.|||++-.+.
T Consensus 109 ~~~~e~~~-c~~~l~~eI~li~----PkiIv~LG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~~pt~HPs~llrnp 181 (204)
T 1vk2_A 109 PTPEEQAA-CGHFLLAQIEIIN----PDVIVALGATALSFFVDGKKVSITKVRGNPIDWLGGKKVIPTFHPSYLLRNR 181 (204)
T ss_dssp CCHHHHHH-HHHHHHHHHHHHC----CSEEEEESHHHHHHTTTTCCCCHHHHTTCCEECGGGCEEEEECCHHHHHHCC
T ss_pred CCHHHHHH-CCCHHHHHHHCCC----CCEEEEECHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHCC
T ss_conf 99899988-4746777763148----6479715899999997267766420369558867998799981965987793