HHsearch results for GI: 254781074 and protein with PDBid: 1wyw_A
>1wyw_A TDG, G/T mismatch-specific thymine DNA glycosylase; hydrolase; 2.10A {Homo sapiens} SCOP: c.18.1.2 PDB: 2d07_A 2rba_A*
Probab=95.73 E-value=0.12 Score=29.72 Aligned_cols=146 Identities=14% Similarity=0.069 Sum_probs=80.3
Q ss_pred HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCC---CCCCHHHHHHCCCEEEECCHHCCCCC
Q ss_conf 617799981188877520007100034798630469999999997418888---77401243220896886010112368
Q gi|254781074|r 57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIP---PTHGFLEHWGHEGVLLLNAVLTVEEG 133 (227)
Q Consensus 57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~---~~~g~L~~Wa~QGVLLLNt~LTv~~g 133 (227)
.+.||+|||+-|=.. ..+.|--|+=+.+. +.+.|..- +... ...-+..--...||-+.|.+--+..+
T Consensus 21 p~~~vLivG~~PG~~-S~~~G~~ya~p~N~--------FW~~L~~~-g~~~~~~~~~e~~~~l~~~gigltdvv~r~t~~ 90 (230)
T 1wyw_A 21 FNLDIVIIGINPGLM-AAYKGHHYPGPGNH--------FWKCLFMS-GLSEVQLNHMDDHTLPGKYGIGFTNMVERTTPG 90 (230)
T ss_dssp SSCSEEEEESSCCHH-HHHHTSSSCSSSBC--------HHHHHHHT-TSSSSCCCGGGGGGHHHHHSEEEEESCCSCCSC
T ss_pred CCCCEEEEECCCCHH-HHHCCCCCCCCCHH--------HHHHHHHH-CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 999789984288966-78438888786134--------99999997-488866787787666653144302122156877
Q ss_pred C--CHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHH-HHHC-----------------CCCCCCEEEEECCCCHH
Q ss_conf 6--04454325999999999999617898799997532333-4420-----------------57666079984788822
Q gi|254781074|r 134 R--AASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQK-KQDV-----------------LDHKRHLVLKAAHPSPL 193 (227)
Q Consensus 134 ~--~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~-~~~~-----------------i~~~~~~il~~~HPSPl 193 (227)
. +.+..-.-+.++....|+.+ ++. +.++-|+.|.. +... +......++..+||||+
T Consensus 91 ~s~ls~~E~~~~~~~L~~~I~~~---~P~-~iv~~G~~A~~~f~~~~~g~~~~~~~~G~q~~~~~~~~~~v~vlPS~S~~ 166 (230)
T 1wyw_A 91 SKDLSSKEFREGGRILVQKLQKY---QPR-IAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSAR 166 (230)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHH---CCS-EEEEESHHHHHHHHHHHTCCCCSSCCSEECSCCSTTSCCEEEEECCCBTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH---CCC-EEEEECHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCEEEECCCCCHH
T ss_conf 78987789987589999999983---996-89870789999998642167753311213554568878569985898188
Q ss_pred HCCCCCCCC--CHHHHHHHHHHHCC
Q ss_conf 257886278--70899999999878
Q gi|254781074|r 194 SASHGFFGC--RHFSKANRYLQEHG 216 (227)
Q Consensus 194 s~~~gF~~~--~~F~~~N~~L~~~~ 216 (227)
.|+-.+..- ..|...-+++.+.+
T Consensus 167 na~~~r~~~k~~~~~~L~~~~d~l~ 191 (230)
T 1wyw_A 167 CAQFPRAQDKVHYYIKLKDLRDQLK 191 (230)
T ss_dssp CSSCCSGGGTHHHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 6087748999999999999999987