HHsearch results for GI: 254781074 and protein with PDBid: 2boo_A
>2boo_A UDG, uracil-DNA glycosylase; UNG, base excision repair, radiation resistance, DNA damage, DNA repair, glycosidase, hydrolase; 1.8A {Deinococcus radiodurans}
Probab=100.00 E-value=0 Score=597.55 Aligned_cols=223 Identities=48% Similarity=0.928 Sum_probs=215.5
Q ss_pred CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEEC
Q ss_conf 68687338999888726589999999999999779808588769999984299861779998118887752000710003
Q gi|254781074|r 3 GVKIHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCFSV 82 (227)
Q Consensus 3 ~l~i~~sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFsv 82 (227)
..+|+++|+++|.+|+.++|+.+|.++|.+++.. .+|||+.++|||||++||+++||||||||||||++|||+||||||
T Consensus 20 ~~~l~~~W~~~L~~e~~~~y~~~l~~~l~~~~~~-~~i~P~~~~iF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFSv 98 (247)
T 2boo_A 20 PANLPEDWQEALLPEFSAPYFHELTDFLRQERKE-YTIYPPAPDVFNALRYTPLGEVKVLILGQDPYHGPNQAHGLSFSV 98 (247)
T ss_dssp CTTCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHH-SCEESCGGGTTHHHHHSCGGGCCEEEEESSCCCSTTCCSSSSSCC
T ss_pred CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHCCCHHHEEEEEECCCCCCCCCCCCCEEEEC
T ss_conf 7888888999999885439999999999999828-933398899999986369757269996068997989527246654
Q ss_pred CCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 479863046999999999741-8888774012432208968860101123686044543259999999999996178987
Q gi|254781074|r 83 PLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNI 161 (227)
Q Consensus 83 ~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~v 161 (227)
+.++++|||||||||||++|+ ++..+++|||++||+||||||||+|||++|+++||+++||++||+.+|++|+++++++
T Consensus 99 ~~~~k~ppSL~NI~kel~~d~~~~~~p~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gWe~ft~~ii~~i~~~~~~v 178 (247)
T 2boo_A 99 RPGVRVPPSLRNIYKELTEDIPGFVAPKHGYLRSWAEQGVLLLNAVLTVRAGQANSHQGKGWEHFTDAVIKAVNAKEERV 178 (247)
T ss_dssp CTTSCCCHHHHHHHHHHHHHSTTCCCCSSCCCHHHHTTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHTCSSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEECEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 78898886689999999875079877887627779859889960647753899998545887999999999998647886
Q ss_pred EEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 999975323334420576660799847888222578862787089999999987889746508898
Q gi|254781074|r 162 VFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQIPLS 227 (227)
Q Consensus 162 VfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~lp~~ 227 (227)
||||||++||+++.+|+..+|+||+++||||||+ ||||||+||++||++|+++|++||||+||++
T Consensus 179 Vf~LWG~~A~~~~~~i~~~~h~il~~~HPSPls~-~~F~g~~~F~k~N~~L~~~g~~pIdW~lp~~ 243 (247)
T 2boo_A 179 VFILWGSYARKKKKLITGKNHVVIESGHPSPLSE-QYFFGTRPFSKTNEALEKAGRGPVEWQLPAT 243 (247)
T ss_dssp EEEEESHHHHGGGGGCCCTTCEEEEECCSSTTTG-GGTTTCCHHHHHHHHHHHTTCCCCCCCCCSS
T ss_pred EEEEECHHHHHHHCCCCCCCCEEEECCCCCHHHC-CCCCCCCHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 9999687899865035888867996589881224-8999998789999999986999973108873