HHSEARCH alignment of GI: 254781074 and SCOP domain: d1muga_

Alignment
>d1muga_ c.18.1.2 (A:) G:T/U mismatch-specific DNA glycosylase, Mug {Escherichia coli [TaxId: 562]}
Probab=94.53  E-value=0.15  Score=27.52  Aligned_cols=125  Identities=16%  Similarity=0.174  Sum_probs=66.9

Q ss_pred             HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCC--CCCHHHHHHCCCEEEECCHHCCCCC-
Q ss_conf             6177999811888775200071000347986304699999999974188887--7401243220896886010112368-
Q gi|254781074|r   57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPP--THGFLEHWGHEGVLLLNAVLTVEEG-  133 (227)
Q Consensus        57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~--~~g~L~~Wa~QGVLLLNt~LTv~~g-  133 (227)
                      .+.||+|+|+-|=.. ..+.|..|+=+ +..       ..+.|.. .+....  .-.+...--+.||-+.|.+-.+... 
T Consensus         8 p~~~vlivG~~PG~~-s~~~g~~f~~p-~n~-------fw~~l~~-~g~~~~~~~~~~~~~l~~~~i~~~d~~~~~~~~~   77 (165)
T d1muga_           8 PGLRVVFCGINPGLS-SAGTGFPFAHP-ANR-------FWKVIYQ-AGFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQA   77 (165)
T ss_dssp             TTCSEEEEESSCCHH-HHHHSSTTCST-TCC-------HHHHHHH-TTSSSSCCCGGGGGGGGGGTEEEEESCCCCCSSG
T ss_pred             CCCCEEEEECCCCHH-HHHCCCCCCCC-HHH-------HHHHHHH-HHCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCC
T ss_conf             999889980798977-88559982684-889-------9999999-7378766777676443104468843766778888


Q ss_pred             C-CHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH-HCCCC---------CCCEEEEECCCCHHHC
Q ss_conf             6-0445432599999999999961789879999753233344-20576---------6607998478882225
Q gi|254781074|r  134 R-AASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQ-DVLDH---------KRHLVLKAAHPSPLSA  195 (227)
Q Consensus       134 ~-~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~-~~i~~---------~~~~il~~~HPSPls~  195 (227)
                      . +..+.   -+.....+.+.|...++.+ .++-|+.|.+.. .....         ....++..+||||+.+
T Consensus        78 ~~~s~~E---i~~~~~~l~~~i~~~~Pki-i~~~G~~a~~~~~~~~~~~~g~q~~~~~~~~~~vlPspSp~~~  146 (165)
T d1muga_          78 NEVSKQE---LHAGGRKLIEKIEDYQPQA-LAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSR  146 (165)
T ss_dssp             GGSCHHH---HHHHHHHHHHHHHHHCCSE-EEEECHHHHHHHHTCCSCCSEEEEEEETTEEEEEECCCSTTSC
T ss_pred             CCCCHHH---HHHCCCCHHHHHHHHCCCE-EEECCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHH
T ss_conf             9999999---9865500899999849948-9982879999984677644454232249967899707986785


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Uracil-DNA glycosylase-like
superfamily: Uracil-DNA glycosylase-like
family: Mug-like
domain: G:T/U mismatch-specific DNA glycosylase, Mug
species: Escherichia coli [TaxId: 562]