HHSEARCH alignment of GI: 254781074 and SCOP domain: d1vk2a_

Alignment

Probab=90.15  E-value=0.29  Score=25.78  Aligned_cols=116  Identities=22%  Similarity=0.273  Sum_probs=66.8

Q ss_pred             HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCCC--CC
Q ss_conf             6177999811888775200071000347986304699999999974188887740124322089688601011236--86
Q gi|254781074|r   57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVEE--GR  134 (227)
Q Consensus        57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~--g~  134 (227)
                      .+.||+|+||-|=.. +..+|..|+-+.+    .-|++++.+    .|..           .+.|.+.|.+--...  ..
T Consensus        37 ~~a~imiVgeaPg~~-e~~~g~pf~g~aG----~~L~~~l~~----~gl~-----------~~~~~it~~~kc~pp~~~~   96 (191)
T d1vk2a_          37 LDTRIVFVGEGPGEE-EDKTGRPFVGRAG----MLLTELLRE----SGIR-----------REDVYICNVVKCRPPNNRT   96 (191)
T ss_dssp             TTCSEEEEESCCCHH-HHHHTCSSCSHHH----HHHHHHHHH----TTCC-----------GGGSEEEESCSSCCGGGCC
T ss_pred             CCCCEEEEECCHHHH-HHHHCCCCCHHHH----HHHHHHHHH----HHHC-----------CCCEEEEEEECCCCCCCCC
T ss_conf             986789996133566-7764765417789----999999886----3202-----------0472797333134764334


Q ss_pred             CH-HHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH-HC------------CCC-CCCEEEEECCCCHHHCCC
Q ss_conf             04-45432599999999999961789879999753233344-20------------576-660799847888222578
Q gi|254781074|r  135 AA-SHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQ-DV------------LDH-KRHLVLKAAHPSPLSASH  197 (227)
Q Consensus       135 ~~-SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~-~~------------i~~-~~~~il~~~HPSPls~~~  197 (227)
                      +. +...- ..+|...-|+.+   ++ -|.++.|+.|.+.. ..            ++. ....++-+.|||.+-.+.
T Consensus        97 p~~~ei~~-C~p~L~~ei~~i---~P-kiii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~~pt~HPs~llr~p  169 (191)
T d1vk2a_          97 PTPEEQAA-CGHFLLAQIEII---NP-DVIVALGATALSFFVDGKKVSITKVRGNPIDWLGGKKVIPTFHPSYLLRNR  169 (191)
T ss_dssp             CCHHHHHH-HHHHHHHHHHHH---CC-SEEEEESHHHHHHTTTTCCCCHHHHTTCCEECGGGCEEEEECCHHHHHHCC
T ss_pred             CCHHHHHH-HHHHHHHHHHHH---CC-CEEEEECCHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHCC
T ss_conf             55589999-999888887652---03-013432608999986035565332367158868998799984988986597

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Uracil-DNA glycosylase-like
superfamily: Uracil-DNA glycosylase-like
family: Mug-like
domain: Thermophilic uracil-DNA glycosylase
species: Thermotoga maritima [TaxId: 2336]