HHSEARCH alignment of GI: 254781074 and SCOP domain: d2j8xa1

Alignment
>d2j8xa1 c.18.1.1 (A:26-255) Uracil-DNA glycosylase {Epstein-Barr virus [TaxId: 10376]}
Probab=100.00  E-value=0  Score=579.84  Aligned_cols=221  Identities=41%  Similarity=0.790  Sum_probs=210.9

Q ss_pred             CCCCCCHHHHHHHH-HHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEE
Q ss_conf             86868733899988-87265899999999999997798085887699999842998617799981188877520007100
Q gi|254781074|r    2 EGVKIHESWKSLLE-NHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCF   80 (227)
Q Consensus         2 ~~l~i~~sW~~~L~-~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaF   80 (227)
                      |++.|+++|+++|+ .++.+.++.++.+++.+++ ++.+|||+.++|||||++||+++||||||||||||+ |||+||||
T Consensus         1 e~l~l~~~W~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~i~P~~~~iF~af~~~~~~~vKVVIlGQDPY~~-~~A~GLaF   78 (230)
T d2j8xa1           1 ENLLLPDLWLDFLQLSPIFQRKLAAVIACVRRLR-TQATVYPEEDMCMAWARFCDPSDIKVVILGQDPYHG-GQANGLAF   78 (230)
T ss_dssp             CCCCCCHHHHHHHTCCHHHHHHHHHHHHHHHHHH-TTSCEESCTTTTTGGGSSSCGGGCCEEEEECSCCSS-SCCCSSSS
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH-CCCEECCCHHHHHHHHHCCCHHHEEEEEEECCCCCC-CCEEEEEE
T ss_conf             9875474899987338766999999999999996-499668787999999874997683799985367878-75214432


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf             03479863046999999999741-88887740124322089688601011236860445432599999999999961789
Q gi|254781074|r   81 SVPLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQ  159 (227)
Q Consensus        81 sv~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~  159 (227)
                      ||+.++++|||||||||||++|+ ++..+.+|||+.||+||||||||+|||++|+|+||+++||+.||+.+|++|+++++
T Consensus        79 Sv~~~~~~PpSL~NI~kel~~d~~~~~~~~~g~L~~Wa~QGVLLLN~~LTv~~g~~~SH~~~gWe~ft~~~i~~l~~~~~  158 (230)
T d2j8xa1          79 SVAYGFPVPPSLRNIYAELHRSLPEFSPPDHGCLDAWASQGVLLLNTILTVQKGKPGSHADIGWAWFTDHVISLLSERLK  158 (230)
T ss_dssp             CCCTTSCCCHHHHHHHHHHHHHCTTCCCCSSCCCHHHHTTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             04678978942999999998645788877789868996388776630367747999983334748899999999972778


Q ss_pred             CEEEEEECCHHHHHHHCCCCCCCEEEEECCCCHH-------HCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             8799997532333442057666079984788822-------2578862787089999999987889746508
Q gi|254781074|r  160 NIVFMLWGASAQKKQDVLDHKRHLVLKAAHPSPL-------SASHGFFGCRHFSKANRYLQEHGKTTVNWQI  224 (227)
Q Consensus       160 ~vVfiLwG~~A~~~~~~i~~~~~~il~~~HPSPl-------s~~~gF~~~~~F~~~N~~L~~~~~~~IdW~l  224 (227)
                      ++||||||++||+++.+|+..+|+||+++|||||       |++||||||+||++||++|+++|++||||+|
T Consensus       159 ~vVfiLWG~~A~~~~~~i~~~~h~Il~s~HPSPls~~~~~~sa~~gF~g~~~F~k~N~~L~~~~~~pIdW~l  230 (230)
T d2j8xa1         159 ACVFMLWGAKAGDKASLINSKKHLVLTSQHPSPLAQNSTRKSAQQKFLGNNHFVLANNFLREKGLGEIDWRL  230 (230)
T ss_dssp             SCEEEEESHHHHGGGGGSCTTTSEEEEECCSSGGGGGCCSSCSSCCSTTCCHHHHHHHHHHHTTCCCCCCCC
T ss_pred             CEEEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf             879984014466666531577876996789994224666531148987888689999999987999923739


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Uracil-DNA glycosylase-like
superfamily: Uracil-DNA glycosylase-like
family: Uracil-DNA glycosylase
domain: Uracil-DNA glycosylase
species: Epstein-Barr virus [TaxId: 10376]