RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781074|ref|YP_003065487.1| uracil-DNA glycosylase
[Candidatus Liberibacter asiaticus str. psy62]
(227 letters)
>d2hxma1 c.18.1.1 (A:82-304) Uracil-DNA glycosylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 223
Score = 251 bits (642), Expect = 4e-68
Identities = 112/219 (51%), Positives = 137/219 (62%), Gaps = 2/219 (0%)
Query: 6 IHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILG 65
ESWK L F + L F+ E RK ++P F + VKVVILG
Sbjct: 4 FGESWKKHLSGEFGKPYFIKLMGFVAEE-RKHYTVYPPPHQVFTWTQMCDIKDVKVVILG 62
Query: 66 QDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVN-FIPPTHGFLEHWGHEGVLLL 124
QDPYH QAHGLCFSV + PPSL N+YKEL D+ F+ P HG L W +GVLLL
Sbjct: 63 QDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLL 122
Query: 125 NAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDVLDHKRHLV 184
NAVLTV +A SH+ RGWEQFTD+V+ ++ N +VF+LWG+ AQKK +D KRH V
Sbjct: 123 NAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHV 182
Query: 185 LKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQ 223
L+ AHPSPLS GFFGCRHFSK N LQ+ GK ++W+
Sbjct: 183 LQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWK 221
>d3euga_ c.18.1.1 (A:) Uracil-DNA glycosylase {Escherichia coli
[TaxId: 562]}
Length = 225
Score = 250 bits (639), Expect = 8e-68
Identities = 116/219 (52%), Positives = 146/219 (66%), Gaps = 1/219 (0%)
Query: 9 SWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDP 68
+W +L Q H N + + SE++ G I+P F AF T VKVVILGQDP
Sbjct: 2 TWHDVLAEEKQQPHFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDP 61
Query: 69 YHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAV 127
YH GQAHGL FSV GI IPPSL+N+YKEL+ + F P HG+LE W +GVLLLN V
Sbjct: 62 YHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTV 121
Query: 128 LTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDVLDHKRHLVLKA 187
LTV G+A SH GWE FTD VI LI+ + + +VF+LWG+ AQKK ++D +RH VLKA
Sbjct: 122 LTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKA 181
Query: 188 AHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQIPL 226
HPSPLSA GFFGC HF AN++L++HG+T ++W L
Sbjct: 182 PHPSPLSAHRGFFGCNHFVLANQWLEQHGETPIDWMPVL 220
>d2j8xa1 c.18.1.1 (A:26-255) Uracil-DNA glycosylase {Epstein-Barr
virus [TaxId: 10376]}
Length = 230
Score = 227 bits (579), Expect = 7e-61
Identities = 90/232 (38%), Positives = 124/232 (53%), Gaps = 11/232 (4%)
Query: 2 EGVKIHESWKSLLENH-FQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVK 60
E + + + W L+ + + + R ++P + +K
Sbjct: 1 ENLLLPDLWLDFLQLSPIFQRKLAAVIACV-RRLRTQATVYPEEDMCMAWARFCDPSDIK 59
Query: 61 VVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPT-HGFLEHWGHE 119
VVILGQDPYH GQA+GL FSV G +PPSL N+Y EL + P HG L+ W +
Sbjct: 60 VVILGQDPYHG-GQANGLAFSVAYGFPVPPSLRNIYAELHRSLPEFSPPDHGCLDAWASQ 118
Query: 120 GVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDVLDH 179
GVLLLN +LTV++G+ SH GW FTD VI L+S + VFMLWGA A K +++
Sbjct: 119 GVLLLNTILTVQKGKPGSHADIGWAWFTDHVISLLSERLKACVFMLWGAKAGDKASLINS 178
Query: 180 KRHLVLKAAHPSPL-------SASHGFFGCRHFSKANRYLQEHGKTTVNWQI 224
K+HLVL + HPSPL SA F G HF AN +L+E G ++W++
Sbjct: 179 KKHLVLTSQHPSPLAQNSTRKSAQQKFLGNNHFVLANNFLREKGLGEIDWRL 230
>d1laue_ c.18.1.1 (E:) Uracil-DNA glycosylase {Herpes simplex virus
type 1 [TaxId: 10298]}
Length = 228
Score = 224 bits (572), Expect = 5e-60
Identities = 85/220 (38%), Positives = 117/220 (53%), Gaps = 4/220 (1%)
Query: 6 IHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILG 65
I ++W+ L+E + +L + + + P F ++V+VVI+G
Sbjct: 12 IDDAWRPLMEPELANPLTAHLLAEYNRR-CQTEEVLPPREDVFSWTRYCTPDEVRVVIIG 70
Query: 66 QDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLL 124
QDPYH+ GQAHGL FSV + PPSL NV ++ HG LE W +GVLLL
Sbjct: 71 QDPYHHPGQAHGLAFSVRANVPPPPSLRNVLAAVKNCYPEARMSGHGCLEKWARDGVLLL 130
Query: 125 NAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDVLDHKRHLV 184
N LTV+ G AASH GW++F VI ++ +VFMLWG AQ D + H V
Sbjct: 131 NTTLTVKRGAAASHSRIGWDRFVGGVIRRLAARRPGLVFMLWGTHAQNAIR-PDPRVHCV 189
Query: 185 LKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQI 224
LK +HPSPLS F C+HF ANRYL+ + ++W +
Sbjct: 190 LKFSHPSPLSKV-PFGTCQHFLVANRYLETRSISPIDWSV 228
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis
[TaxId: 1358]}
Length = 340
Score = 27.8 bits (61), Expect = 0.83
Identities = 14/71 (19%), Positives = 20/71 (28%), Gaps = 8/71 (11%)
Query: 140 GRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGF 199
G G + + L + I F GA D +HL+L +
Sbjct: 8 GLGSDLIS-----LTNKAGVTISFTNLGARIV---DWQKDGKHLILGFDSAKEYLEKDAY 59
Query: 200 FGCRHFSKANR 210
G A R
Sbjct: 60 PGATVGPTAGR 70
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 25.6 bits (55), Expect = 3.3
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 109 THGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGA 168
T G + + L + A RG++ + +++N Q ++
Sbjct: 138 TPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLL----- 192
Query: 169 SAQKKQDVLD 178
SA DVL+
Sbjct: 193 SATMPSDVLE 202
>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1,
LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 25.1 bits (55), Expect = 5.6
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 101 EDVNFIPPTHGFLEHWG 117
D + H +LE G
Sbjct: 73 SDTVLVHRVHSYLERHG 89
>d2fq3a1 a.4.1.18 (A:311-395) Transcription regulatory protein swi3
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 85
Score = 25.1 bits (55), Expect = 5.8
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 102 DVNFIPPTHGFLEHWGH 118
D + H FL WG
Sbjct: 64 DAAALFRLHKFLTKWGL 80
>d1tuva_ d.58.4.11 (A:) Hypothetical protein YgiN {Escherichia
coli [TaxId: 562]}
Length = 103
Score = 24.6 bits (53), Expect = 7.5
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 6 IHESWKS--LLENHFQSEHMRNLKE 28
+ E W+S LE H Q+ HM+ E
Sbjct: 62 MIEQWESIAHLEAHLQTPHMKAYSE 86
>d1x7va_ d.58.4.11 (A:) Hypothetical protein PA3566 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 98
Score = 24.5 bits (53), Expect = 8.3
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 6 IHESWKSL--LENHFQSEHMRNLKEFL 30
+ E W+ LE H +EH
Sbjct: 56 MIEQWRDDAALERHQNTEHFLRFSRGN 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.436
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 912,835
Number of extensions: 42652
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 18
Length of query: 227
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,281,736
Effective search space: 185851720
Effective search space used: 185851720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)