Query         gi|254781075|ref|YP_003065488.1| hypothetical protein CLIBASIA_04885 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 266
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 21:36:02 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781075.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1k8k_G P16, ARP2/3 complex 16  66.2     4.8 0.00014   20.6   2.7   47   69-119   103-149 (151)
  2 >3i5x_A ATP-dependent RNA heli  49.2      19 0.00056   16.8   4.4   58  127-184     8-68  (77)
  3 >2nt8_A Cobalamin adenosyltran  46.6      21 0.00062   16.5   4.2  107  142-248    85-206 (223)
  4 >2idx_A COB(I)yrinic acid A,C-  25.7      45  0.0013   14.4   4.2  105  144-248    53-175 (196)
  5 >3ci3_A Cobalamin adenosyltran  25.2      46  0.0014   14.3   4.6  106  143-248    57-177 (194)
  6 >3a1s_A Iron(II) transport pro  22.3      29 0.00085   15.6   0.7   20  217-236    45-64  (85)
  7 >1epw_A Bontoxilysin B, botuli  18.0      64  0.0019   13.4   2.6   42  198-239    27-69  (73)
  8 >2jhn_A ALKA, 3-methyladenine   16.2      48  0.0014   14.2   0.7   26  222-247    19-44  (55)
  9 >1erd_A Pheromone ER-2; NMR {E  15.9      48  0.0014   14.2   0.6   14  104-117    22-35  (40)
 10 >3f4m_A Tumor necrosis factor,  15.2      76  0.0022   12.9   1.7   54  141-194    54-112 (161)

No 1  
>>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} (G:)
Probab=66.23  E-value=4.8  Score=20.62  Aligned_cols=47  Identities=32%  Similarity=0.473  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHCCCEECCCEEEHHHHHHHHHHHHHHHHHHHHHHEECCCCE
Q ss_conf             999999998531420022222011200654999999999865641117741
Q gi|254781075|r   69 INFLISYIYKNIGYKISSQYYSLTEYTWHDIETFLALLYMSCILVATDDRK  119 (266)
Q Consensus        69 inflisyiyknigykissqyyslteytwhdietflallymscilvatddrk  119 (266)
                      ...|.-||||..  ...++..+-.-.+||  |...+.--+.||.-.-.|||
T Consensus       103 ~D~LMKYiYkG~--~~p~~~~~~~LL~WH--EKl~~~~G~G~IvRvltdRr  149 (151)
T 1k8k_G          103 VDLLMKYIYKGF--ESPSDNSSAVLLQWH--EKALAAGGVGSIVRVLTARK  149 (151)
T ss_dssp             HHHHHHHHHHHH--TSCCTTHHHHHHHHH--HHHHHHHHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHC--CCCCCCHHHHHHHHH--HHHHHHCCCCCEEEEECCCC
T ss_conf             899999999741--588865017999999--99999749873688850563


No 2  
>>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, helicase, hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* (A:487-563)
Probab=49.22  E-value=19  Score=16.80  Aligned_cols=58  Identities=34%  Similarity=0.503  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCHHHEEEECCCHHHHHHHHHHHHH
Q ss_conf             59999999999999875588888788999---99730031002531464776412488789
Q gi|254781075|r  127 DRIIEIIQSIRRAFDQYKEEERKALSDIQ---EQLLNDASKKIVFSSDREEYIGLHQKQID  184 (266)
Q Consensus       127 driieiiqsirrafdqykeeerkalsdiq---eqllndaskkivfssdreeyiglhqkqid  184 (266)
                      |-+|-.|..-|-.-..|.-.++|++..|.   .++|||..+||-.|+.--+-+||....|.
T Consensus         8 d~liS~ISfYR~c~k~ygf~~~~~l~qIA~sYG~lL~dp~~kiPis~~~l~klGL~~~~I~   68 (77)
T 3i5x_A            8 DIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPIG   68 (77)
T ss_dssp             HHHHHHHHHHHHTHHHHTCCHHHHHHHHHTHHHHHTTCTTCCEEECHHHHHHHTCTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf             9999999999999999987599999999998776615854783023889986589889853


No 3  
>>2nt8_A Cobalamin adenosyltransferase; ATP binding; HET: ATP; 1.68A {Lactobacillus reuteri} (A:)
Probab=46.58  E-value=21  Score=16.54  Aligned_cols=107  Identities=15%  Similarity=0.192  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHEEEECCCH-HHHHHHHHHHHHHHHHHHHHHHHHH---H-------HHHHHHHHHHHH
Q ss_conf             7558888878899999730031002531464-7764124887899997588999998---6-------665202456999
Q gi|254781075|r  142 QYKEEERKALSDIQEQLLNDASKKIVFSSDR-EEYIGLHQKQIDLIHQNIDRHLARM---K-------NQLVAESDELED  210 (266)
Q Consensus       142 qykeeerkalsdiqeqllndaskkivfssdr-eeyiglhqkqidlihqnidrhlarm---k-------nqlvaesdeled  210 (266)
                      ...++-+..|..||..|.+=.+--..-..+. ....++....++.+.++||+..+..   +       +..+|.-+..--
T Consensus        85 ~~~~~l~~~L~~Iq~~Lf~l~~~la~~~~~~~~~~~~i~~e~i~~Le~~id~~~~~lp~~~~FIlPgg~~~~a~Lh~aRt  164 (223)
T 2nt8_A           85 SHTQVLSNELEEIQQLLFDCGHDLATPADDERHSFKFKQEQPTVWLEEKIDNYTQVVPAVKKFILPGGTQLASALHVART  164 (223)
T ss_dssp             GGGGGGHHHHHHHHHHHHHHHHHHTSCTTCSSCCCCCCCHHHHHHHHHHHHHHHHHSCCCSSCEESCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             13578999999999999999898637765441001200477999999999999875555664020588668899999999


Q ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHHHH----HHHHHHHHHH
Q ss_conf             9854030126656411276678887778----8887766413
Q gi|254781075|r  211 ILSRYSIESIPLDLPEMSQDEAIKYINH----VYLLGKWISR  248 (266)
Q Consensus       211 ilsrysiesipldlpemsqdeaikyinh----vyllgkwisr  248 (266)
                      +.-|---.-..+.-.+-.....++|+|.    .|.+..++..
T Consensus       165 v~RraER~~v~l~~~~~~~~~il~yLNRLSD~lfvlaR~~n~  206 (223)
T 2nt8_A          165 ITRRAERQIVQLMREEQINQDVLIFINRLSDYFFAAARYANY  206 (223)
T ss_dssp             HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999871699889999998999999999999999


No 4  
>>2idx_A COB(I)yrinic acid A,C-diamide adenosyltransferase; ATP, cobalamin; HET: ATP; 2.50A {Homo sapiens} (A:)
Probab=25.69  E-value=45  Score=14.39  Aligned_cols=105  Identities=15%  Similarity=0.190  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHCCHHHEEE---EC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Q ss_conf             588888788999997300310025---31-46477641248878999975889999986----------66520245699
Q gi|254781075|r  144 KEEERKALSDIQEQLLNDASKKIV---FS-SDREEYIGLHQKQIDLIHQNIDRHLARMK----------NQLVAESDELE  209 (266)
Q Consensus       144 keeerkalsdiqeqllndaskkiv---fs-sdreeyiglhqkqidlihqnidrhlarmk----------nqlvaesdele  209 (266)
                      .++-+..|.+||.+|.+-.+---.   .. .......++.++.+.-+...||+..+...          ...+|.-+..-
T Consensus        53 ~~~~~~~L~~iQ~~L~~l~~~lat~~~~~~~~~~~~~~i~~~~i~~Le~~id~~~~~~~~~~~FilPgg~~~~a~Lh~aR  132 (196)
T 2idx_A           53 GHTFAEELQKIQCTLQDVGSALATPCSSAREAHLKYTTFKAGPILELEQWIDKYTSQLPPLTAFILPSGGKISSALHFCR  132 (196)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCC--------------CCSHHHHHHHHHHHHHHHTSCCCCSCBCSCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHH
T ss_conf             78899999999999999975634786433320001132358999999999999986585530100257867889999988


Q ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHHHH----HHHHHHHHHH
Q ss_conf             99854030126656411276678887778----8887766413
Q gi|254781075|r  210 DILSRYSIESIPLDLPEMSQDEAIKYINH----VYLLGKWISR  248 (266)
Q Consensus       210 dilsrysiesipldlpemsqdeaikyinh----vyllgkwisr  248 (266)
                      -+.-|---.-..+.--+-...+.++|+|.    .|.+..|...
T Consensus       133 tv~RraER~~v~l~~~~~~~~~il~ylNRLSd~lfvlaR~~~~  175 (196)
T 2idx_A          133 AVCRRAERRVVPLVQMGETDANVAKFLNRLSDYLFTLARYAAM  175 (196)
T ss_dssp             HHHHHHHHHHTTTTTTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8889999999999863688789999999999999999999999


No 5  
>>3ci3_A Cobalamin adenosyltransferase PDUO-like protein; adenosyltransferase variant, adenosylcobalamin binding, ATP binding; HET: 3PO 5AD B12; 1.11A {Lactobacillus reuteri} PDB: 3ci1_A* 3ci4_A* 2r6t_A* 2r6x_A* 3gah_A* 3gai_A* 3gaj_A* (A:)
Probab=25.25  E-value=46  Score=14.33  Aligned_cols=106  Identities=15%  Similarity=0.193  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHEEEECCCHH-HHHHHHHHHHHHHHHHHHHHHHHH---H-------HHHHHHHHHHHHH
Q ss_conf             5588888788999997300310025314647-764124887899997588999998---6-------6652024569999
Q gi|254781075|r  143 YKEEERKALSDIQEQLLNDASKKIVFSSDRE-EYIGLHQKQIDLIHQNIDRHLARM---K-------NQLVAESDELEDI  211 (266)
Q Consensus       143 ykeeerkalsdiqeqllndaskkivfssdre-eyiglhqkqidlihqnidrhlarm---k-------nqlvaesdeledi  211 (266)
                      -.++-+..|..||.+|.+=.+--...+.+.+ ...++....+..+.+.||+..+..   +       +..+|.-+..--+
T Consensus        57 ~~~~~~~~L~~IQ~~L~~l~~~la~~~~~~~~~~~~i~~~~i~~Le~~id~~~~~l~~~~~FilPgg~~~~a~Lh~aRtv  136 (194)
T 3ci3_A           57 HTQVLSNELEEIQQLLFDCGHDLATPADDERHSFKFKQEQPTVWLEEKIDNYTQVVPAVKKFILPGGTQLASALHVARTI  136 (194)
T ss_dssp             TTGGGHHHHHHHHHHHHHHHHHHTSCTTCTTCCCCCCCHHHHHHHHHHHHHHHHHSCCCSSCBCSCSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             22899999999999999988987689864443335564789999999999998548986602789989999999999999


Q ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHHHH----HHHHHHHHHH
Q ss_conf             854030126656411276678887778----8887766413
Q gi|254781075|r  212 LSRYSIESIPLDLPEMSQDEAIKYINH----VYLLGKWISR  248 (266)
Q Consensus       212 lsrysiesipldlpemsqdeaikyinh----vyllgkwisr  248 (266)
                      .-|---.-..+.-.+-.....++|+|.    .|.+..++..
T Consensus       137 ~RraER~~v~l~~~~~v~~~il~ylNRLSd~lfvlaR~~n~  177 (194)
T 3ci3_A          137 TRRAERQIVQLMREEQINQDVLIFINRLSDYFFAAARYANY  177 (194)
T ss_dssp             HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999862699889999998999999999999999


No 6  
>>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A (A:174-258)
Probab=22.34  E-value=29  Score=15.64  Aligned_cols=20  Identities=45%  Similarity=0.745  Sum_probs=17.1

Q ss_pred             CCCCCCCCCCCCHHHHHHHH
Q ss_conf             01266564112766788877
Q gi|254781075|r  217 IESIPLDLPEMSQDEAIKYI  236 (266)
Q Consensus       217 iesipldlpemsqdeaikyi  236 (266)
                      -|...|.|||.|..|.|.|-
T Consensus        45 ~egvklglpelseeeri~yr   64 (85)
T 3a1s_A           45 SEGVKLGLPELSEEERIGYR   64 (85)
T ss_dssp             HHHHHTTCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHH
T ss_conf             99887657889988465899


No 7  
>>1epw_A Bontoxilysin B, botulinum neurotoxin type B; zinc, metalloprotease, transmembrane, hydrolase; 1.90A {Clostridium botulinum} (A:787-859)
Probab=18.01  E-value=64  Score=13.39  Aligned_cols=42  Identities=21%  Similarity=0.358  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHHHHH
Q ss_conf             66652024569999854030126656411276678-8877788
Q gi|254781075|r  198 KNQLVAESDELEDILSRYSIESIPLDLPEMSQDEA-IKYINHV  239 (266)
Q Consensus       198 knqlvaesdeledilsrysiesipldlpemsqdea-ikyinhv  239 (266)
                      +--|+.+.++|.+....+--.|||.+|..-..|.- |.|+|.-
T Consensus        27 ~~~L~~~v~~lk~~V~~tL~~sIPF~LSsYTndkiLi~~fn~y   69 (73)
T 1epw_A           27 KLYLIGSAEYEKSKVNKYLKTIMPFDLSIYTNDTILIEMFNKY   69 (73)
T ss_dssp             HHHHCTTTTTTHHHHHHHTTSCCCCCGGGTCCCHHHHHHHHHH
T ss_pred             CCEECCCCHHHHHHHHHHHCCCCCCCHHHCCCCCEEEEHHHHH
T ss_conf             6542031078898765433256776365412753011035677


No 8  
>>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A (A:112-130,A:199-234)
Probab=16.16  E-value=48  Score=14.24  Aligned_cols=26  Identities=27%  Similarity=0.638  Sum_probs=21.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             56411276678887778888776641
Q gi|254781075|r  222 LDLPEMSQDEAIKYINHVYLLGKWIS  247 (266)
Q Consensus       222 ldlpemsqdeaikyinhvyllgkwis  247 (266)
                      -.|++|+.+|+++....+-=.|.|-.
T Consensus        19 ~~L~~m~Deevi~~Lt~IkGIG~WTA   44 (55)
T 2jhn_A           19 QELKEWGEEEAYEYLTSFKGIGRWTA   44 (55)
T ss_dssp             TGGGGSCHHHHHHHHHTSTTCCHHHH
T ss_pred             CHHHHCCCHHHHHHHHHCCCCCHHHH
T ss_conf             13120243167889875378289999


No 9  
>>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} (A:)
Probab=15.89  E-value=48  Score=14.22  Aligned_cols=14  Identities=50%  Similarity=0.883  Sum_probs=11.3

Q ss_pred             HHHHHHHHHEECCC
Q ss_conf             99998656411177
Q gi|254781075|r  104 ALLYMSCILVATDD  117 (266)
Q Consensus       104 allymscilvatdd  117 (266)
                      .-|||.||-+.||.
T Consensus        22 gplymtcigittdp   35 (40)
T 1erd_A           22 GPLYMTCIGITTDP   35 (40)
T ss_dssp             HHHHHHHHHHHTCT
T ss_pred             CCEEEEEEEECCCC
T ss_conf             87057887421487


No 10 
>>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens} (A:)
Probab=15.18  E-value=76  Score=12.94  Aligned_cols=54  Identities=17%  Similarity=0.294  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHEEEE-----CCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8755888887889999973003100253-----14647764124887899997588999
Q gi|254781075|r  141 DQYKEEERKALSDIQEQLLNDASKKIVF-----SSDREEYIGLHQKQIDLIHQNIDRHL  194 (266)
Q Consensus       141 dqykeeerkalsdiqeqllndaskkivf-----ssdreeyiglhqkqidlihqnidrhl  194 (266)
                      +|..+||-+-..+++..+-+-|-.-|-|     +-||.--+++-...-+++||-+.|||
T Consensus        54 ~qf~~eEl~~~~~fr~K~~~~amt~iSFyevdfTfD~~~L~~~L~ecr~~L~~lV~~HL  112 (161)
T 3f4m_A           54 GSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVLLELVEHHL  112 (161)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTSCCCHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             78999999999999999999889985230121343599999999999999999999768


Done!