Query gi|254781075|ref|YP_003065488.1| hypothetical protein CLIBASIA_04885 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 266 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 21:36:02 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781075.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1k8k_G P16, ARP2/3 complex 16 66.2 4.8 0.00014 20.6 2.7 47 69-119 103-149 (151) 2 >3i5x_A ATP-dependent RNA heli 49.2 19 0.00056 16.8 4.4 58 127-184 8-68 (77) 3 >2nt8_A Cobalamin adenosyltran 46.6 21 0.00062 16.5 4.2 107 142-248 85-206 (223) 4 >2idx_A COB(I)yrinic acid A,C- 25.7 45 0.0013 14.4 4.2 105 144-248 53-175 (196) 5 >3ci3_A Cobalamin adenosyltran 25.2 46 0.0014 14.3 4.6 106 143-248 57-177 (194) 6 >3a1s_A Iron(II) transport pro 22.3 29 0.00085 15.6 0.7 20 217-236 45-64 (85) 7 >1epw_A Bontoxilysin B, botuli 18.0 64 0.0019 13.4 2.6 42 198-239 27-69 (73) 8 >2jhn_A ALKA, 3-methyladenine 16.2 48 0.0014 14.2 0.7 26 222-247 19-44 (55) 9 >1erd_A Pheromone ER-2; NMR {E 15.9 48 0.0014 14.2 0.6 14 104-117 22-35 (40) 10 >3f4m_A Tumor necrosis factor, 15.2 76 0.0022 12.9 1.7 54 141-194 54-112 (161) No 1 >>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} (G:) Probab=66.23 E-value=4.8 Score=20.62 Aligned_cols=47 Identities=32% Similarity=0.473 Sum_probs=24.2 Q ss_pred HHHHHHHHHHHCCCEECCCEEEHHHHHHHHHHHHHHHHHHHHHHEECCCCE Q ss_conf 999999998531420022222011200654999999999865641117741 Q gi|254781075|r 69 INFLISYIYKNIGYKISSQYYSLTEYTWHDIETFLALLYMSCILVATDDRK 119 (266) Q Consensus 69 inflisyiyknigykissqyyslteytwhdietflallymscilvatddrk 119 (266) ...|.-||||.. ...++..+-.-.+|| |...+.--+.||.-.-.||| T Consensus 103 ~D~LMKYiYkG~--~~p~~~~~~~LL~WH--EKl~~~~G~G~IvRvltdRr 149 (151) T 1k8k_G 103 VDLLMKYIYKGF--ESPSDNSSAVLLQWH--EKALAAGGVGSIVRVLTARK 149 (151) T ss_dssp HHHHHHHHHHHH--TSCCTTHHHHHHHHH--HHHHHHHHHHHHHHHHTCSC T ss_pred HHHHHHHHHHHC--CCCCCCHHHHHHHHH--HHHHHHCCCCCEEEEECCCC T ss_conf 899999999741--588865017999999--99999749873688850563 No 2 >>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, helicase, hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* (A:487-563) Probab=49.22 E-value=19 Score=16.80 Aligned_cols=58 Identities=34% Similarity=0.503 Sum_probs=45.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCHHHEEEECCCHHHHHHHHHHHHH Q ss_conf 59999999999999875588888788999---99730031002531464776412488789 Q gi|254781075|r 127 DRIIEIIQSIRRAFDQYKEEERKALSDIQ---EQLLNDASKKIVFSSDREEYIGLHQKQID 184 (266) Q Consensus 127 driieiiqsirrafdqykeeerkalsdiq---eqllndaskkivfssdreeyiglhqkqid 184 (266) |-+|-.|..-|-.-..|.-.++|++..|. .++|||..+||-.|+.--+-+||....|. T Consensus 8 d~liS~ISfYR~c~k~ygf~~~~~l~qIA~sYG~lL~dp~~kiPis~~~l~klGL~~~~I~ 68 (77) T 3i5x_A 8 DIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPIG 68 (77) T ss_dssp HHHHHHHHHHHHTHHHHTCCHHHHHHHHHTHHHHHTTCTTCCEEECHHHHHHHTCTTCHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCC T ss_conf 9999999999999999987599999999998776615854783023889986589889853 No 3 >>2nt8_A Cobalamin adenosyltransferase; ATP binding; HET: ATP; 1.68A {Lactobacillus reuteri} (A:) Probab=46.58 E-value=21 Score=16.54 Aligned_cols=107 Identities=15% Similarity=0.192 Sum_probs=58.7 Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHEEEECCCH-HHHHHHHHHHHHHHHHHHHHHHHHH---H-------HHHHHHHHHHHH Q ss_conf 7558888878899999730031002531464-7764124887899997588999998---6-------665202456999 Q gi|254781075|r 142 QYKEEERKALSDIQEQLLNDASKKIVFSSDR-EEYIGLHQKQIDLIHQNIDRHLARM---K-------NQLVAESDELED 210 (266) Q Consensus 142 qykeeerkalsdiqeqllndaskkivfssdr-eeyiglhqkqidlihqnidrhlarm---k-------nqlvaesdeled 210 (266) ...++-+..|..||..|.+=.+--..-..+. ....++....++.+.++||+..+.. + +..+|.-+..-- T Consensus 85 ~~~~~l~~~L~~Iq~~Lf~l~~~la~~~~~~~~~~~~i~~e~i~~Le~~id~~~~~lp~~~~FIlPgg~~~~a~Lh~aRt 164 (223) T 2nt8_A 85 SHTQVLSNELEEIQQLLFDCGHDLATPADDERHSFKFKQEQPTVWLEEKIDNYTQVVPAVKKFILPGGTQLASALHVART 164 (223) T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHHTSCTTCSSCCCCCCCHHHHHHHHHHHHHHHHHSCCCSSCEESCSSHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 13578999999999999999898637765441001200477999999999999875555664020588668899999999 Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHH----HHHHHHHHHH Q ss_conf 9854030126656411276678887778----8887766413 Q gi|254781075|r 211 ILSRYSIESIPLDLPEMSQDEAIKYINH----VYLLGKWISR 248 (266) Q Consensus 211 ilsrysiesipldlpemsqdeaikyinh----vyllgkwisr 248 (266) +.-|---.-..+.-.+-.....++|+|. .|.+..++.. T Consensus 165 v~RraER~~v~l~~~~~~~~~il~yLNRLSD~lfvlaR~~n~ 206 (223) T 2nt8_A 165 ITRRAERQIVQLMREEQINQDVLIFINRLSDYFFAAARYANY 206 (223) T ss_dssp HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999871699889999998999999999999999 No 4 >>2idx_A COB(I)yrinic acid A,C-diamide adenosyltransferase; ATP, cobalamin; HET: ATP; 2.50A {Homo sapiens} (A:) Probab=25.69 E-value=45 Score=14.39 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=58.1 Q ss_pred HHHHHHHHHHHHHHHHCCHHHEEE---EC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH Q ss_conf 588888788999997300310025---31-46477641248878999975889999986----------66520245699 Q gi|254781075|r 144 KEEERKALSDIQEQLLNDASKKIV---FS-SDREEYIGLHQKQIDLIHQNIDRHLARMK----------NQLVAESDELE 209 (266) Q Consensus 144 keeerkalsdiqeqllndaskkiv---fs-sdreeyiglhqkqidlihqnidrhlarmk----------nqlvaesdele 209 (266) .++-+..|.+||.+|.+-.+---. .. .......++.++.+.-+...||+..+... ...+|.-+..- T Consensus 53 ~~~~~~~L~~iQ~~L~~l~~~lat~~~~~~~~~~~~~~i~~~~i~~Le~~id~~~~~~~~~~~FilPgg~~~~a~Lh~aR 132 (196) T 2idx_A 53 GHTFAEELQKIQCTLQDVGSALATPCSSAREAHLKYTTFKAGPILELEQWIDKYTSQLPPLTAFILPSGGKISSALHFCR 132 (196) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCC--------------CCSHHHHHHHHHHHHHHHTSCCCCSCBCSCSSHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHH T ss_conf 78899999999999999975634786433320001132358999999999999986585530100257867889999988 Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHH----HHHHHHHHHH Q ss_conf 99854030126656411276678887778----8887766413 Q gi|254781075|r 210 DILSRYSIESIPLDLPEMSQDEAIKYINH----VYLLGKWISR 248 (266) Q Consensus 210 dilsrysiesipldlpemsqdeaikyinh----vyllgkwisr 248 (266) -+.-|---.-..+.--+-...+.++|+|. .|.+..|... T Consensus 133 tv~RraER~~v~l~~~~~~~~~il~ylNRLSd~lfvlaR~~~~ 175 (196) T 2idx_A 133 AVCRRAERRVVPLVQMGETDANVAKFLNRLSDYLFTLARYAAM 175 (196) T ss_dssp HHHHHHHHHHTTTTTTTSSCHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8889999999999863688789999999999999999999999 No 5 >>3ci3_A Cobalamin adenosyltransferase PDUO-like protein; adenosyltransferase variant, adenosylcobalamin binding, ATP binding; HET: 3PO 5AD B12; 1.11A {Lactobacillus reuteri} PDB: 3ci1_A* 3ci4_A* 2r6t_A* 2r6x_A* 3gah_A* 3gai_A* 3gaj_A* (A:) Probab=25.25 E-value=46 Score=14.33 Aligned_cols=106 Identities=15% Similarity=0.193 Sum_probs=57.9 Q ss_pred HHHHHHHHHHHHHHHHHCCHHHEEEECCCHH-HHHHHHHHHHHHHHHHHHHHHHHH---H-------HHHHHHHHHHHHH Q ss_conf 5588888788999997300310025314647-764124887899997588999998---6-------6652024569999 Q gi|254781075|r 143 YKEEERKALSDIQEQLLNDASKKIVFSSDRE-EYIGLHQKQIDLIHQNIDRHLARM---K-------NQLVAESDELEDI 211 (266) Q Consensus 143 ykeeerkalsdiqeqllndaskkivfssdre-eyiglhqkqidlihqnidrhlarm---k-------nqlvaesdeledi 211 (266) -.++-+..|..||.+|.+=.+--...+.+.+ ...++....+..+.+.||+..+.. + +..+|.-+..--+ T Consensus 57 ~~~~~~~~L~~IQ~~L~~l~~~la~~~~~~~~~~~~i~~~~i~~Le~~id~~~~~l~~~~~FilPgg~~~~a~Lh~aRtv 136 (194) T 3ci3_A 57 HTQVLSNELEEIQQLLFDCGHDLATPADDERHSFKFKQEQPTVWLEEKIDNYTQVVPAVKKFILPGGTQLASALHVARTI 136 (194) T ss_dssp TTGGGHHHHHHHHHHHHHHHHHHTSCTTCTTCCCCCCCHHHHHHHHHHHHHHHHHSCCCSSCBCSCSSHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 22899999999999999988987689864443335564789999999999998548986602789989999999999999 Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHH----HHHHHHHHHH Q ss_conf 854030126656411276678887778----8887766413 Q gi|254781075|r 212 LSRYSIESIPLDLPEMSQDEAIKYINH----VYLLGKWISR 248 (266) Q Consensus 212 lsrysiesipldlpemsqdeaikyinh----vyllgkwisr 248 (266) .-|---.-..+.-.+-.....++|+|. .|.+..++.. T Consensus 137 ~RraER~~v~l~~~~~v~~~il~ylNRLSd~lfvlaR~~n~ 177 (194) T 3ci3_A 137 TRRAERQIVQLMREEQINQDVLIFINRLSDYFFAAARYANY 177 (194) T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999862699889999998999999999999999 No 6 >>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A (A:174-258) Probab=22.34 E-value=29 Score=15.64 Aligned_cols=20 Identities=45% Similarity=0.745 Sum_probs=17.1 Q ss_pred CCCCCCCCCCCCHHHHHHHH Q ss_conf 01266564112766788877 Q gi|254781075|r 217 IESIPLDLPEMSQDEAIKYI 236 (266) Q Consensus 217 iesipldlpemsqdeaikyi 236 (266) -|...|.|||.|..|.|.|- T Consensus 45 ~egvklglpelseeeri~yr 64 (85) T 3a1s_A 45 SEGVKLGLPELSEEERIGYR 64 (85) T ss_dssp HHHHHTTCCCCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHH T ss_conf 99887657889988465899 No 7 >>1epw_A Bontoxilysin B, botulinum neurotoxin type B; zinc, metalloprotease, transmembrane, hydrolase; 1.90A {Clostridium botulinum} (A:787-859) Probab=18.01 E-value=64 Score=13.39 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=33.8 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHHHHH Q ss_conf 66652024569999854030126656411276678-8877788 Q gi|254781075|r 198 KNQLVAESDELEDILSRYSIESIPLDLPEMSQDEA-IKYINHV 239 (266) Q Consensus 198 knqlvaesdeledilsrysiesipldlpemsqdea-ikyinhv 239 (266) +--|+.+.++|.+....+--.|||.+|..-..|.- |.|+|.- T Consensus 27 ~~~L~~~v~~lk~~V~~tL~~sIPF~LSsYTndkiLi~~fn~y 69 (73) T 1epw_A 27 KLYLIGSAEYEKSKVNKYLKTIMPFDLSIYTNDTILIEMFNKY 69 (73) T ss_dssp HHHHCTTTTTTHHHHHHHTTSCCCCCGGGTCCCHHHHHHHHHH T ss_pred CCEECCCCHHHHHHHHHHHCCCCCCCHHHCCCCCEEEEHHHHH T ss_conf 6542031078898765433256776365412753011035677 No 8 >>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A (A:112-130,A:199-234) Probab=16.16 E-value=48 Score=14.24 Aligned_cols=26 Identities=27% Similarity=0.638 Sum_probs=21.7 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 56411276678887778888776641 Q gi|254781075|r 222 LDLPEMSQDEAIKYINHVYLLGKWIS 247 (266) Q Consensus 222 ldlpemsqdeaikyinhvyllgkwis 247 (266) -.|++|+.+|+++....+-=.|.|-. T Consensus 19 ~~L~~m~Deevi~~Lt~IkGIG~WTA 44 (55) T 2jhn_A 19 QELKEWGEEEAYEYLTSFKGIGRWTA 44 (55) T ss_dssp TGGGGSCHHHHHHHHHTSTTCCHHHH T ss_pred CHHHHCCCHHHHHHHHHCCCCCHHHH T ss_conf 13120243167889875378289999 No 9 >>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} (A:) Probab=15.89 E-value=48 Score=14.22 Aligned_cols=14 Identities=50% Similarity=0.883 Sum_probs=11.3 Q ss_pred HHHHHHHHHEECCC Q ss_conf 99998656411177 Q gi|254781075|r 104 ALLYMSCILVATDD 117 (266) Q Consensus 104 allymscilvatdd 117 (266) .-|||.||-+.||. T Consensus 22 gplymtcigittdp 35 (40) T 1erd_A 22 GPLYMTCIGITTDP 35 (40) T ss_dssp HHHHHHHHHHHTCT T ss_pred CCEEEEEEEECCCC T ss_conf 87057887421487 No 10 >>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens} (A:) Probab=15.18 E-value=76 Score=12.94 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHEEEE-----CCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8755888887889999973003100253-----14647764124887899997588999 Q gi|254781075|r 141 DQYKEEERKALSDIQEQLLNDASKKIVF-----SSDREEYIGLHQKQIDLIHQNIDRHL 194 (266) Q Consensus 141 dqykeeerkalsdiqeqllndaskkivf-----ssdreeyiglhqkqidlihqnidrhl 194 (266) +|..+||-+-..+++..+-+-|-.-|-| +-||.--+++-...-+++||-+.||| T Consensus 54 ~qf~~eEl~~~~~fr~K~~~~amt~iSFyevdfTfD~~~L~~~L~ecr~~L~~lV~~HL 112 (161) T 3f4m_A 54 GSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVLLELVEHHL 112 (161) T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTSCCCHHHHHHHHHHHHHHHHHHHTTTS T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 78999999999999999999889985230121343599999999999999999999768 Done!