RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781075|ref|YP_003065488.1| hypothetical protein
CLIBASIA_04885 [Candidatus Liberibacter asiaticus str. psy62]
(266 letters)
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 34.5 bits (79), Expect = 0.016
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 13/69 (18%)
Query: 137 RRAFD----QYKEEERKALSDIQEQLLNDASKKIVFSSDREEYIGLHQKQIDLIHQNIDR 192
+R Q K+ L ++ + + S D+ E++ ++ IH +
Sbjct: 30 KRQLVTREAQIKDWVENELEALKLEA--EEIP----SEDQNEFL---LERTREIHNEAES 80
Query: 193 HLARMKNQL 201
L + Q
Sbjct: 81 QLRAAQQQW 89
>2w2e_A Aquaporin; yeast, gating, membrane protein; HET: BOG; 1.15A
{Pichia pastoris} PDB: 2w1p_A* (A:)
Length = 279
Score = 29.1 bits (64), Expect = 0.60
Identities = 8/105 (7%), Positives = 24/105 (22%), Gaps = 1/105 (0%)
Query: 16 WSFLFAILSPTEVYNVHRRIWHLLRDDFGYFTKRTFFCFAFFITIIYVFFP-IFINFLIS 74
+ F F ++ + R F + + S
Sbjct: 90 FGFGFGVMVGVFITYRVSGGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAAS 149
Query: 75 YIYKNIGYKISSQYYSLTEYTWHDIETFLALLYMSCILVATDDRK 119
+ ++ + +E F + +L+ ++
Sbjct: 150 AMTPGEIAFANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKH 194
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family);
membrane protein, transport protein; HET: BOG; 1.65A
{Aquifex aeolicus VF5} (A:)
Length = 519
Score = 28.4 bits (62), Expect = 1.1
Identities = 9/95 (9%), Positives = 29/95 (30%), Gaps = 6/95 (6%)
Query: 19 LFAILSPTEVYNVHRRIWHLLRDDFGYFTKRTFFCFAFFITIIYVFFPIFINFLISYIYK 78
L ++ ++ + + R + ++ + + + + YI K
Sbjct: 417 LTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAV--LLVVWAREYIPK 474
Query: 79 NIGYKISSQYYSLTEYTWHDIETFLALLYMSCILV 113
+ + + + I FL L ++ +
Sbjct: 475 IMEETHWTVWITRFYI----IGLFLFLTFLVFLAE 505
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} (A:72-109,A:249-428)
Length = 218
Score = 26.8 bits (58), Expect = 2.7
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 190 IDRHLARMKNQ--LVAESDELED 210
+DRHL ++ ++ E D+
Sbjct: 11 LDRHLQENGDRTAIIWEGDDTSQ 33
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET:
PLP; 1.80A {Thermus thermophilus} (A:1-42,A:282-385)
Length = 146
Score = 26.7 bits (59), Expect = 3.0
Identities = 12/100 (12%), Positives = 28/100 (28%), Gaps = 23/100 (23%)
Query: 122 MIEDGDRIIEIIQSIRRAFDQYKEEERKALSDIQEQLLNDASKKIVFSSDREEYIGLHQK 181
M R+ + S A + E R+ D+ + L
Sbjct: 1 MRGLSRRVQAMKPSATVAVNAKALELRRQGVDL---------------------VALTAG 39
Query: 182 QIDLIHQNIDRHLARMKNQLVAESDELEDILSRYSIESIP 221
+ D + + + D L + L+ ++++
Sbjct: 40 EPDQ--EASRAFVEMAREAYRRRRDLLLEGLTALGLKAVR 77
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A
{Homo sapiens} PDB: 1st6_A (A:718-865)
Length = 148
Score = 25.9 bits (57), Expect = 6.0
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 121 RMIEDGDRIIEIIQSIRRAFDQYKEEERKALSDIQEQLLND 161
++ G RI+ + +R AF + + D+++ L D
Sbjct: 99 SFLDSGYRILGAVAKVREAFQPQEPDFPPPPPDLEQLRLTD 139
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA
helicase, DEAD-BOX, ATP-binding, helicase, hydrolase,
mitochondrion; HET: ANP; 1.90A {Saccharomyces
cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* (A:487-563)
Length = 77
Score = 25.6 bits (56), Expect = 6.4
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 127 DRIIEIIQSIRRAFDQYKEEERKALSDIQE---QLLNDASKKIVFSSDREEYIGLHQKQI 183
D +I +I S R +Y+ ER+ L +I LLND KI S + +GL + I
Sbjct: 8 DIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPI 67
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response,
somatic hypermutation, protein-DNA complex, DNA mispair,
cancer, ABC transporter ATPase; HET: DNA ADP; 2.75A
{Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
(B:419-624,B:672-732)
Length = 267
Score = 25.5 bits (55), Expect = 8.0
Identities = 13/99 (13%), Positives = 33/99 (33%), Gaps = 17/99 (17%)
Query: 127 DRIIEIIQSIRRAFDQYKEEERKALSDIQEQLLNDASKKIVFSSDREEYIGLHQKQIDLI 186
R ++ + R + E+ + + K F SD ++ + ++ +
Sbjct: 144 GRFPDLTVELNRWDTAFDHEKARKT--------GLITPKAGFDSDYDQALADIRENEQSL 195
Query: 187 HQNIDRH---------LARMKNQLVAESDELEDILSRYS 216
+ +++ LA + N L+D + R
Sbjct: 196 LEYLEKQRNRITIEKKLANLINAEERRDVSLKDCMRRLF 234
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent
oligomerization, ATP hydrolysis; 2.2A {Bos taurus} (A:)
Length = 84
Score = 25.2 bits (55), Expect = 9.5
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 145 EEERKALSDIQEQLLNDASKKIVFSSDREEYIGLHQKQIDLIHQNIDRHLARMKN 199
EEER + +EQL A KK +E I H K+I+ + + I+RH +K
Sbjct: 29 EEERYFRARAKEQL--AALKK-----HKENEISHHAKEIERLQKEIERHKQSIKK 76
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.326 0.141 0.418
Gapped
Lambda K H
0.267 0.0652 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,122,803
Number of extensions: 99387
Number of successful extensions: 500
Number of sequences better than 10.0: 1
Number of HSP's gapped: 496
Number of HSP's successfully gapped: 43
Length of query: 266
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 179
Effective length of database: 2,015,014
Effective search space: 360687506
Effective search space used: 360687506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.7 bits)