RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781075|ref|YP_003065488.1| hypothetical protein
CLIBASIA_04885 [Candidatus Liberibacter asiaticus str. psy62]
(266 letters)
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 48.0 bits (113), Expect = 2e-06
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 19/80 (23%)
Query: 123 IEDGDRIIEIIQSIRRAFDQYKEEERK------ALSDIQEQLLNDASKKIVFSSDREEYI 176
I DR+ + +SIR+ ++EE+RK A S + EQ + +KK D EE+
Sbjct: 74 IAQADRLTQEPESIRK----WREEQRKRLQELDAASKVMEQEWREKAKK-----DLEEW- 123
Query: 177 GLHQKQIDLIHQN-IDRHLA 195
+Q+Q + + +N I+ +A
Sbjct: 124 --NQRQSEQVEKNKINNRIA 141
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 46.9 bits (111), Expect = 5e-06
Identities = 38/229 (16%), Positives = 71/229 (31%), Gaps = 75/229 (32%)
Query: 90 SLTEYT---WHDIETF----LALLYMSCILVATDDRKLRMIEDGDR--IIEIIQSIRRAF 140
L E T D E L ++ V+ ++E +++ F
Sbjct: 40 ILPEPTEGFAADDEPTTPAELVGKFLG--YVS------SLVEPSKVGQFDQVLNLCLTEF 91
Query: 141 DQYKEEERKAL--SDIQE---QLLND------ASKKIVFSSDREEYIGLH--QKQIDLIH 187
E L +DI +LL + +K+++ + ++ D
Sbjct: 92 ------ENCYLEGNDIHALAAKLLQENDTTLVKTKELI----KNYITARIMAKRPFDKKS 141
Query: 188 QN-IDRHLARMKNQLVA--------ES--DELEDILSRYS------IESIPLDLPEMSQD 230
+ + R + QLVA + +EL D+ Y I+ L E+ +
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 231 E--AIKYINHVYL-LGKWISRGEIQRSQIARREY----------IGYLQ 266
A K L + +W+ S ++Y IG +Q
Sbjct: 202 TLDAEKVFTQ-GLNILEWLEN----PSNTPDKDYLLSIPISCPLIGVIQ 245
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.7 bits (73), Expect = 0.085
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 7/25 (28%)
Query: 147 ERKALSDIQEQLLNDASKKIVFSSD 171
E++AL +Q AS K+ ++ D
Sbjct: 18 EKQALKKLQ------ASLKL-YADD 35
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets,
alpha helices, alternative splicing, amyloid,
amyloidosis, blood coagulation, coiled coil; HET: NAG
NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B*
1deq_B 2a45_H*
Length = 461
Score = 29.7 bits (66), Expect = 0.71
Identities = 9/122 (7%), Positives = 41/122 (33%), Gaps = 4/122 (3%)
Query: 116 DDRKLRMIEDGDRIIEIIQSIRRAFDQYKEEERKALSDIQEQLLNDASKKIVFSSDREEY 175
D + G ++ E + R +E + + + + + ++
Sbjct: 69 DPDLGVLCPTGCQLQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKR 128
Query: 176 ---IGLHQKQIDLIHQNIDRHLARMKNQLVAESDELEDILSRYSIESIPLDLPEMSQDEA 232
+ ++ ++ +++H + + + +L +E++ + ++ D +
Sbjct: 129 QKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRS-ILENLRSKIQKLESDVS 187
Query: 233 IK 234
+
Sbjct: 188 AQ 189
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2)
tetramer, riken structural genomics/proteomics
initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus
HB8} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Length = 474
Score = 29.4 bits (65), Expect = 0.89
Identities = 8/39 (20%), Positives = 20/39 (51%)
Query: 200 QLVAESDELEDILSRYSIESIPLDLPEMSQDEAIKYINH 238
+LV + ED++ + + +P LPE+ + +++
Sbjct: 18 KLVKAVPKAEDLIPKEHLREVPPRLPEVDELTLVRHYTG 56
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent
oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP:
h.4.8.1 PDB: 1ohh_H* 1hf9_A
Length = 84
Score = 28.7 bits (63), Expect = 1.5
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 124 EDGDRIIEIIQSIRRAFDQY-----KEEERKALSDIQEQLLNDASKKIVFSSDREEYIGL 178
E GD + ++R A + EEER + +EQL +E I
Sbjct: 3 ESGDNVRSSAGAVRDAGGAFGKREQAEEERYFRARAKEQL-------AALKKHKENEISH 55
Query: 179 HQKQIDLIHQNIDRHLARMKNQLVAESDE 207
H K+I+ + + I+RH +K +E D+
Sbjct: 56 HAKEIERLQKEIERHKQSIKKLKQSEDDD 84
>1y1u_A Signal transducer and activator of transcription 5A; STAT,
DNA-binding, SH2 domain, transcription regulation,
signaling protein; 3.21A {Mus musculus}
Length = 585
Score = 28.2 bits (62), Expect = 1.8
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 127 DRIIEIIQSIR--RAFDQYKEEERKALSDIQEQLLNDASKKIVFSSDREEYIGLHQKQID 184
+ ++I Q R Q E E K L QE + + + + + L+ ++
Sbjct: 12 QKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQERM 71
Query: 185 LIHQNIDRHLARMKNQLVAESDELED 210
+ + ++ L E+ L+
Sbjct: 72 SRETALQQKQVSLETWLQREAQTLQQ 97
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3;
1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A*
1viy_A 1t3h_A 1n3b_A
Length = 218
Score = 27.5 bits (60), Expect = 2.9
Identities = 23/163 (14%), Positives = 54/163 (33%), Gaps = 8/163 (4%)
Query: 31 VHRRIWHLLRDDFGYFTKRTFFCFAFFITIIYVFFPIFINFLISYIYKNIGYKISSQYYS 90
+ + G +R F + ++ LI ++ + +S Y
Sbjct: 52 IADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQATSPYVL 111
Query: 91 LTEYTWHDIETFLALLYMSCILVATDDRKLRMIEDGDRIIEIIQSIRRAFDQYKEEERKA 150
+ + + + V+ + + R ++ D E ++ I A Q E R A
Sbjct: 112 WVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAA--QATREARLA 169
Query: 151 LSDIQEQLLNDASKKIVFSSDREEYIGLHQKQIDLIHQNIDRH 193
++D + N+ + + + LH + L Q + +
Sbjct: 170 VADD--VIDNNGAPDAI----ASDVARLHAHYLQLASQFVSQE 206
>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapeptide repeat:serine
O-acetyltransferase...; ssgcid, structural genomics;
1.95A {Brucella melitensis biovar abortus}
Length = 287
Score = 26.6 bits (58), Expect = 5.4
Identities = 15/100 (15%), Positives = 28/100 (28%), Gaps = 8/100 (8%)
Query: 4 RIANTIVATSKKWSFLFAILSPTEVYNVHRRIWHLLRDDFGYFTKR------TFFCFAFF 57
RIA + L + + H+LR D R +
Sbjct: 71 RIAERLGHPDVSADILRQTFD--TMLEANPEWSHVLRVDIQAVYDRDPAYSRFMDPVLYL 128
Query: 58 ITIIYVFFPIFINFLISYIYKNIGYKISSQYYSLTEYTWH 97
+ ++L K+ Y + S+ S+ + H
Sbjct: 129 KGFHAIQTHRLAHWLYKQGRKDFAYYLQSRSSSIFQTDIH 168
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter
baumannii} PDB: 2xkk_A*
Length = 767
Score = 26.9 bits (59), Expect = 5.5
Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 25/113 (22%)
Query: 117 DRKLRMIEDGDRIIEIIQSIRRAFDQYKEE--ERKALSDIQEQ---------LLNDASKK 165
L D D +I II R DQ K E + +IQ + L +
Sbjct: 645 AGLLIAYLDIDTVIRII----REEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLEEME 700
Query: 166 IVFSSDREEYIGLHQKQIDLIHQNIDRHLARMKNQLVAESDELEDILSRYSIE 218
I R E L K + + + +KN ++ EL++ ++ E
Sbjct: 701 I-----RHEQDELSAKAAII--REQLENPESLKNLII---SELKEDAKKFGDE 743
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 26.2 bits (57), Expect = 8.3
Identities = 9/93 (9%), Positives = 20/93 (21%)
Query: 111 ILVATDDRKLRMIEDGDRIIEIIQSIRRAFDQYKEEERKALSDIQEQLLNDASKKIVFSS 170
+ V + +R+ + A I ++ + I ++
Sbjct: 92 VDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTA 151
Query: 171 DREEYIGLHQKQIDLIHQNIDRHLARMKNQLVA 203
IH D R +
Sbjct: 152 TPPGTTDPFPDSNAPIHDLQDEIPDRAWSSGYE 184
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.326 0.141 0.418
Gapped
Lambda K H
0.267 0.0525 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,425,075
Number of extensions: 117469
Number of successful extensions: 781
Number of sequences better than 10.0: 1
Number of HSP's gapped: 773
Number of HSP's successfully gapped: 55
Length of query: 266
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 175
Effective length of database: 3,487,026
Effective search space: 610229550
Effective search space used: 610229550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.8 bits)