RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781075|ref|YP_003065488.1| hypothetical protein CLIBASIA_04885 [Candidatus Liberibacter asiaticus str. psy62] (266 letters) >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 48.0 bits (113), Expect = 2e-06 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 19/80 (23%) Query: 123 IEDGDRIIEIIQSIRRAFDQYKEEERK------ALSDIQEQLLNDASKKIVFSSDREEYI 176 I DR+ + +SIR+ ++EE+RK A S + EQ + +KK D EE+ Sbjct: 74 IAQADRLTQEPESIRK----WREEQRKRLQELDAASKVMEQEWREKAKK-----DLEEW- 123 Query: 177 GLHQKQIDLIHQN-IDRHLA 195 +Q+Q + + +N I+ +A Sbjct: 124 --NQRQSEQVEKNKINNRIA 141 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 46.9 bits (111), Expect = 5e-06 Identities = 38/229 (16%), Positives = 71/229 (31%), Gaps = 75/229 (32%) Query: 90 SLTEYT---WHDIETF----LALLYMSCILVATDDRKLRMIEDGDR--IIEIIQSIRRAF 140 L E T D E L ++ V+ ++E +++ F Sbjct: 40 ILPEPTEGFAADDEPTTPAELVGKFLG--YVS------SLVEPSKVGQFDQVLNLCLTEF 91 Query: 141 DQYKEEERKAL--SDIQE---QLLND------ASKKIVFSSDREEYIGLH--QKQIDLIH 187 E L +DI +LL + +K+++ + ++ D Sbjct: 92 ------ENCYLEGNDIHALAAKLLQENDTTLVKTKELI----KNYITARIMAKRPFDKKS 141 Query: 188 QN-IDRHLARMKNQLVA--------ES--DELEDILSRYS------IESIPLDLPEMSQD 230 + + R + QLVA + +EL D+ Y I+ L E+ + Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201 Query: 231 E--AIKYINHVYL-LGKWISRGEIQRSQIARREY----------IGYLQ 266 A K L + +W+ S ++Y IG +Q Sbjct: 202 TLDAEKVFTQ-GLNILEWLEN----PSNTPDKDYLLSIPISCPLIGVIQ 245 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 32.7 bits (73), Expect = 0.085 Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 7/25 (28%) Query: 147 ERKALSDIQEQLLNDASKKIVFSSD 171 E++AL +Q AS K+ ++ D Sbjct: 18 EKQALKKLQ------ASLKL-YADD 35 >3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H* Length = 461 Score = 29.7 bits (66), Expect = 0.71 Identities = 9/122 (7%), Positives = 41/122 (33%), Gaps = 4/122 (3%) Query: 116 DDRKLRMIEDGDRIIEIIQSIRRAFDQYKEEERKALSDIQEQLLNDASKKIVFSSDREEY 175 D + G ++ E + R +E + + + + + ++ Sbjct: 69 DPDLGVLCPTGCQLQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKR 128 Query: 176 ---IGLHQKQIDLIHQNIDRHLARMKNQLVAESDELEDILSRYSIESIPLDLPEMSQDEA 232 + ++ ++ +++H + + + +L +E++ + ++ D + Sbjct: 129 QKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRS-ILENLRSKIQKLESDVS 187 Query: 233 IK 234 + Sbjct: 188 AQ 189 >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomics initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus HB8} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* Length = 474 Score = 29.4 bits (65), Expect = 0.89 Identities = 8/39 (20%), Positives = 20/39 (51%) Query: 200 QLVAESDELEDILSRYSIESIPLDLPEMSQDEAIKYINH 238 +LV + ED++ + + +P LPE+ + +++ Sbjct: 18 KLVKAVPKAEDLIPKEHLREVPPRLPEVDELTLVRHYTG 56 >1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A Length = 84 Score = 28.7 bits (63), Expect = 1.5 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 12/89 (13%) Query: 124 EDGDRIIEIIQSIRRAFDQY-----KEEERKALSDIQEQLLNDASKKIVFSSDREEYIGL 178 E GD + ++R A + EEER + +EQL +E I Sbjct: 3 ESGDNVRSSAGAVRDAGGAFGKREQAEEERYFRARAKEQL-------AALKKHKENEISH 55 Query: 179 HQKQIDLIHQNIDRHLARMKNQLVAESDE 207 H K+I+ + + I+RH +K +E D+ Sbjct: 56 HAKEIERLQKEIERHKQSIKKLKQSEDDD 84 >1y1u_A Signal transducer and activator of transcription 5A; STAT, DNA-binding, SH2 domain, transcription regulation, signaling protein; 3.21A {Mus musculus} Length = 585 Score = 28.2 bits (62), Expect = 1.8 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 2/86 (2%) Query: 127 DRIIEIIQSIR--RAFDQYKEEERKALSDIQEQLLNDASKKIVFSSDREEYIGLHQKQID 184 + ++I Q R Q E E K L QE + + + + + L+ ++ Sbjct: 12 QKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQERM 71 Query: 185 LIHQNIDRHLARMKNQLVAESDELED 210 + + ++ L E+ L+ Sbjct: 72 SRETALQQKQVSLETWLQREAQTLQQ 97 >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A Length = 218 Score = 27.5 bits (60), Expect = 2.9 Identities = 23/163 (14%), Positives = 54/163 (33%), Gaps = 8/163 (4%) Query: 31 VHRRIWHLLRDDFGYFTKRTFFCFAFFITIIYVFFPIFINFLISYIYKNIGYKISSQYYS 90 + + G +R F + ++ LI ++ + +S Y Sbjct: 52 IADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQATSPYVL 111 Query: 91 LTEYTWHDIETFLALLYMSCILVATDDRKLRMIEDGDRIIEIIQSIRRAFDQYKEEERKA 150 + + + + V+ + + R ++ D E ++ I A Q E R A Sbjct: 112 WVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAA--QATREARLA 169 Query: 151 LSDIQEQLLNDASKKIVFSSDREEYIGLHQKQIDLIHQNIDRH 193 ++D + N+ + + + LH + L Q + + Sbjct: 170 VADD--VIDNNGAPDAI----ASDVARLHAHYLQLASQFVSQE 206 >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapeptide repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} Length = 287 Score = 26.6 bits (58), Expect = 5.4 Identities = 15/100 (15%), Positives = 28/100 (28%), Gaps = 8/100 (8%) Query: 4 RIANTIVATSKKWSFLFAILSPTEVYNVHRRIWHLLRDDFGYFTKR------TFFCFAFF 57 RIA + L + + H+LR D R + Sbjct: 71 RIAERLGHPDVSADILRQTFD--TMLEANPEWSHVLRVDIQAVYDRDPAYSRFMDPVLYL 128 Query: 58 ITIIYVFFPIFINFLISYIYKNIGYKISSQYYSLTEYTWH 97 + ++L K+ Y + S+ S+ + H Sbjct: 129 KGFHAIQTHRLAHWLYKQGRKDFAYYLQSRSSSIFQTDIH 168 >2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* Length = 767 Score = 26.9 bits (59), Expect = 5.5 Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 25/113 (22%) Query: 117 DRKLRMIEDGDRIIEIIQSIRRAFDQYKEE--ERKALSDIQEQ---------LLNDASKK 165 L D D +I II R DQ K E + +IQ + L + Sbjct: 645 AGLLIAYLDIDTVIRII----REEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLEEME 700 Query: 166 IVFSSDREEYIGLHQKQIDLIHQNIDRHLARMKNQLVAESDELEDILSRYSIE 218 I R E L K + + + +KN ++ EL++ ++ E Sbjct: 701 I-----RHEQDELSAKAAII--REQLENPESLKNLII---SELKEDAKKFGDE 743 >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 Score = 26.2 bits (57), Expect = 8.3 Identities = 9/93 (9%), Positives = 20/93 (21%) Query: 111 ILVATDDRKLRMIEDGDRIIEIIQSIRRAFDQYKEEERKALSDIQEQLLNDASKKIVFSS 170 + V + +R+ + A I ++ + I ++ Sbjct: 92 VDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTA 151 Query: 171 DREEYIGLHQKQIDLIHQNIDRHLARMKNQLVA 203 IH D R + Sbjct: 152 TPPGTTDPFPDSNAPIHDLQDEIPDRAWSSGYE 184 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.326 0.141 0.418 Gapped Lambda K H 0.267 0.0525 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,425,075 Number of extensions: 117469 Number of successful extensions: 781 Number of sequences better than 10.0: 1 Number of HSP's gapped: 773 Number of HSP's successfully gapped: 55 Length of query: 266 Length of database: 5,693,230 Length adjustment: 91 Effective length of query: 175 Effective length of database: 3,487,026 Effective search space: 610229550 Effective search space used: 610229550 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 56 (25.8 bits)