RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781075|ref|YP_003065488.1| hypothetical protein CLIBASIA_04885 [Candidatus Liberibacter asiaticus str. psy62] (266 letters) >d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]} Length = 144 Score = 29.8 bits (67), Expect = 0.23 Identities = 14/112 (12%), Positives = 39/112 (34%), Gaps = 8/112 (7%) Query: 112 LVATDDRKLRMIED---GDRIIEIIQSIRRAFDQYKEEERKALSDIQEQLLNDASKKIV- 167 + ++ + + ++ + YK E + L+ + E+ SK++ Sbjct: 19 VQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQA 78 Query: 168 ----FSSDREEYIGLHQKQIDLIHQNIDRHLARMKNQLVAESDELEDILSRY 215 +D E+ G + + + + ++ +L + +L L R Sbjct: 79 AQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRD 130 >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} Length = 471 Score = 29.4 bits (65), Expect = 0.30 Identities = 8/39 (20%), Positives = 20/39 (51%) Query: 200 QLVAESDELEDILSRYSIESIPLDLPEMSQDEAIKYINH 238 +LV + ED++ + + +P LPE+ + +++ Sbjct: 17 KLVKAVPKAEDLIPKEHLREVPPRLPEVDELTLVRHYTG 55 >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Length = 208 Score = 27.1 bits (59), Expect = 1.4 Identities = 18/180 (10%), Positives = 49/180 (27%), Gaps = 20/180 (11%) Query: 27 EVYNVHRRIWHLLRDDFGYFTKRTFFCFAFFITIIYVFFPIFINFLISYIYKNI--GYKI 84 +V H + D FG +F ++ + + Sbjct: 39 QVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQ 98 Query: 85 SSQYYSLTEYTWHDIETFLALLYMSC---ILVATDDRKLRMIEDGDRIIEIIQSIRRAFD 141 + + Y + + +LV + ++ R + + + Sbjct: 99 HQIQQATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILA 158 Query: 142 -QYKEEERKALSDIQEQLLNDASKKIVFSSDREEYIGLHQKQIDLIHQNIDRHLARMKNQ 200 Q E R A++D + N+ + + + +H + + ++ +Q Sbjct: 159 AQATREARLAVADD--VIDNNGAPDAI------------ASDVARLHAHYLQLASQFVSQ 204 >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 Score = 25.2 bits (54), Expect = 5.4 Identities = 10/85 (11%), Positives = 25/85 (29%), Gaps = 1/85 (1%) Query: 93 EYTWHDIETFLALLYMSCILVATDDRKLRMIEDGDRIIE-IIQSIRRAFDQYKEEERKAL 151 + + I A + G R + +++ + + Sbjct: 224 LMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQT 283 Query: 152 SDIQEQLLNDASKKIVFSSDREEYI 176 +I + DA ++V + D +I Sbjct: 284 VNIDAAYVADALGEVVENEDLSRFI 308 >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} Length = 205 Score = 24.8 bits (53), Expect = 8.2 Identities = 16/158 (10%), Positives = 42/158 (26%), Gaps = 5/158 (3%) Query: 31 VHRRIWHLLRDDFGYFTKRTFFCFAFFITIIYVFFPIFINFLISYIYKNIGYKISSQYYS 90 V +L + + + + + + + + Sbjct: 51 VEHFGAQILTEQGELNRAALRERVFNHDEDKLWLNNLLHPAIRERMKQKLAEQTAPYTLF 110 Query: 91 LTEYTWHDIETFLALLYMSCILVATDDRKLRMIEDGDRIIEIIQSIRRAFDQYKEEERKA 150 + + T L + + D + +I + + Q ++ER Sbjct: 111 VVPLLIENKLTALCDRILVVDVSPQTQLARSAQRDNNNFEQIQRIMNS---QVSQQERLK 167 Query: 151 LSDIQEQLLNDASKKIVFSSDREEYIGLHQKQIDLIHQ 188 +D + NDA +++ + LHQ + Sbjct: 168 WADD--VINNDAELAQNLPHLQQKVLELHQFYLQQAEN 203 >d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 246 Score = 24.7 bits (54), Expect = 8.4 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 13/71 (18%) Query: 51 FFCFAFFIT-IIYVFFPIFINFL-------ISYIYKNIGYKISSQYYSLTEYTWHDIETF 102 FF F F + II + + FL + I ++ KI Y YT DI Sbjct: 164 FFAFHFILPFIIMAIAMVHLLFLHETGSNNPTGISSDV-DKIPFHPY----YTIKDILGA 218 Query: 103 LALLYMSCILV 113 L L+ +LV Sbjct: 219 LLLILALMLLV 229 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.326 0.141 0.418 Gapped Lambda K H 0.267 0.0556 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,056,871 Number of extensions: 51838 Number of successful extensions: 298 Number of sequences better than 10.0: 1 Number of HSP's gapped: 297 Number of HSP's successfully gapped: 36 Length of query: 266 Length of database: 2,407,596 Length adjustment: 84 Effective length of query: 182 Effective length of database: 1,254,276 Effective search space: 228278232 Effective search space used: 228278232 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 52 (24.2 bits)